Wall clock time and date at job start Mon Mar 30 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.61538 * 308.07779 * 10 9 7 12 12 C 1.54912 * 110.69621 * 185.00017 * 10 9 7 13 13 O 1.44790 * 101.72115 * 206.03919 * 12 10 9 14 14 C 1.43747 * 104.81311 * 36.10500 * 13 12 10 15 15 H 1.09000 * 109.63571 * 95.41648 * 14 13 12 16 16 C 1.53004 * 109.63325 * 215.80545 * 14 13 12 17 17 C 1.53183 * 109.53850 * 58.36701 * 16 14 13 18 18 C 1.53106 * 109.15370 * 183.24130 * 17 16 14 19 19 O 1.42905 * 109.48473 * 57.47686 * 18 17 16 20 20 C 1.42899 * 114.09809 * 298.88724 * 19 18 17 21 21 C 1.53087 * 109.41770 * 61.15946 * 20 19 18 22 22 O 1.43372 * 108.79516 * 335.68413 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 110.97958 * 324.14801 * 12 10 9 27 27 H 1.09003 * 110.97546 * 87.93284 * 12 10 9 28 28 H 1.08993 * 109.54715 * 178.54487 * 16 14 13 29 29 H 1.08998 * 109.52399 * 303.06150 * 17 16 14 30 30 H 1.09003 * 109.52000 * 63.24987 * 17 16 14 31 31 H 1.09000 * 109.40953 * 297.49778 * 18 17 16 32 32 H 1.08997 * 109.49047 * 177.50863 * 18 17 16 33 33 H 1.08998 * 109.47903 * 301.17438 * 20 19 18 34 34 H 1.09008 * 109.49122 * 181.14816 * 20 19 18 35 35 H 1.08992 * 109.52533 * 182.48492 * 21 20 19 36 36 H 1.09008 * 109.57431 * 62.32642 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9729 -3.5450 -0.8036 12 6 1.5037 -5.0163 -0.1268 13 8 2.4368 -5.9230 0.5084 14 6 3.0093 -5.1649 1.5872 15 1 2.4681 -5.3747 2.5098 16 6 4.4817 -5.5444 1.7576 17 6 5.2340 -5.2778 0.4502 18 6 6.6869 -5.7356 0.6043 19 8 6.7156 -7.1202 0.9568 20 6 6.0686 -7.4205 2.1951 21 6 4.5905 -7.0325 2.1043 22 8 2.9044 -3.7690 1.2775 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 0.5552 -4.9934 0.4098 27 1 1.3521 -5.2821 -1.1731 28 1 4.9211 -4.9503 2.5588 29 1 4.7627 -5.8326 -0.3610 30 1 5.2085 -4.2113 0.2263 31 1 7.1697 -5.1511 1.3875 32 1 7.2162 -5.5891 -0.3372 33 1 6.5434 -6.8580 2.9990 34 1 6.1523 -8.4879 2.3996 35 1 4.1052 -7.2198 3.0620 36 1 4.1047 -7.6238 1.3280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260561346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:06 Heat of formation + Delta-G solvation = -174.686552 kcal Electronic energy + Delta-G solvation = -18264.738297 eV Core-core repulsion = 15326.504738 eV Total energy + Delta-G solvation = -2938.233560 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62577 -39.85565 -36.23115 -35.44036 -34.83078 -32.40934 -32.02047 -28.86799 -27.19465 -25.11363 -24.50984 -23.57669 -22.32544 -20.89562 -18.65574 -18.15929 -17.62330 -16.94850 -16.84201 -16.80209 -16.39696 -15.67677 -15.29323 -15.00336 -14.65364 -14.38196 -14.14741 -13.76910 -13.62952 -13.26243 -13.18413 -13.09845 -12.51994 -12.41281 -12.24351 -12.18301 -11.78723 -11.55207 -11.39297 -11.17408 -11.00187 -10.74820 -10.59901 -10.18335 -8.22221 -6.31348 1.39391 1.42065 1.50041 2.40072 2.53744 2.95324 3.04473 3.14599 3.66248 3.72687 3.83817 3.89697 4.03654 4.07925 4.24656 4.29021 4.42358 4.47929 4.57230 4.65544 4.68619 4.73972 4.79796 4.83040 4.93153 5.05110 5.13930 5.21271 5.31779 5.38995 5.53997 5.73717 6.15179 6.26411 6.27565 6.79927 7.36327 8.89377 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.005768 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.009570 B = 4852.817058 C = 5368.159031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.070 3.930 11 H 0.071 0.929 12 C 0.025 3.975 13 O -0.382 6.382 14 C 0.227 3.773 15 H 0.081 0.919 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.065 3.935 19 O -0.401 6.401 20 C 0.060 3.940 21 C -0.140 4.140 22 O -0.392 6.392 23 H 0.265 0.735 24 H -0.001 1.001 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -13.413 3.207 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.072 0.928 9 C -0.009 4.009 10 C 0.013 3.987 11 H 0.089 0.911 12 C -0.051 4.051 13 O -0.303 6.303 14 C 0.132 3.868 15 H 0.098 0.902 16 C -0.117 4.117 17 C -0.181 4.181 18 C -0.011 4.011 19 O -0.321 6.321 20 C -0.016 4.016 21 C -0.178 4.178 22 O -0.313 6.313 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.011 -13.499 3.165 17.102 hybrid contribution -0.391 1.394 0.112 1.452 sum 9.620 -12.105 3.278 15.806 Atomic orbital electron populations 1.70056 1.07553 1.27910 1.51600 1.25879 0.95761 1.03065 0.94734 0.85543 0.78350 0.78374 0.79049 1.20581 1.19761 1.19046 1.21431 0.93196 0.91996 1.50510 0.92810 1.19102 0.93468 0.92077 0.96266 1.23776 0.94099 0.95883 0.84934 0.91120 1.24515 0.93023 0.86935 1.00664 1.89104 1.57517 1.36850 1.46804 1.24203 0.94793 0.77025 0.90782 0.90163 1.21653 0.93006 0.98081 0.98986 1.22059 0.96961 1.01465 0.97618 1.22609 0.94917 0.81972 1.01605 1.87885 1.77491 1.25807 1.40884 1.22727 0.90669 1.02402 0.85807 1.22106 0.98555 0.93958 1.03179 1.88952 1.80425 1.23815 1.38128 0.92659 0.98244 0.95917 0.90740 0.85618 0.89302 0.91868 0.91930 0.92241 0.87868 0.92005 0.86943 0.89191 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -30.49 9.04 25.60 0.23 -30.26 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.45 4.73 29.85 0.14 1.59 16 10 C 0.07 2.93 3.58 31.25 0.11 3.04 16 11 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 12 C 0.02 0.83 7.40 72.64 0.54 1.37 16 13 O -0.38 -12.57 9.92 -126.22 -1.25 -13.82 16 14 C 0.23 7.49 3.65 71.98 0.26 7.75 16 15 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.10 -2.68 2.38 -10.67 -0.03 -2.70 16 17 C -0.14 -4.00 5.13 30.69 0.16 -3.84 16 18 C 0.07 1.51 6.84 72.02 0.49 2.00 16 19 O -0.40 -9.77 10.77 -148.98 -1.60 -11.38 16 20 C 0.06 1.15 6.84 72.01 0.49 1.64 16 21 C -0.14 -3.05 5.33 30.68 0.16 -2.89 16 22 O -0.39 -16.47 10.29 -126.22 -1.30 -17.77 16 23 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 24 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 27 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 1.91 7.56 -2.39 -0.02 1.90 16 30 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.66 7.65 -2.38 -0.02 1.64 16 Total: -1.00 -65.35 292.20 2.22 -63.12 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.04 Total: 10.60 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 3.03 Total: -21.63 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -4.16 Total: -42.97 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.35 2.22 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.563 kcal (2) G-P(sol) polarization free energy of solvation -65.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds