Wall clock time and date at job start Mon Mar 30 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99546 * 2 1 4 4 H 1.48496 * 109.47240 * 269.99446 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00017 * 3 2 1 6 6 H 1.48499 * 109.46720 * 149.99636 * 3 2 1 7 7 C 1.37870 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47067 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.62145 * 54.29674 * 10 9 7 12 12 C 1.54913 * 110.84219 * 177.47751 * 10 9 7 13 13 O 1.44783 * 101.72427 * 154.02559 * 12 10 9 14 14 C 1.43759 * 104.81346 * 323.90203 * 13 12 10 15 15 H 1.09006 * 109.62411 * 264.43352 * 14 13 12 16 16 C 1.52998 * 109.63342 * 144.19149 * 14 13 12 17 17 C 1.53170 * 109.54383 * 180.18901 * 16 14 13 18 18 C 1.53095 * 109.16605 * 183.15062 * 17 16 14 19 19 O 1.42906 * 109.41292 * 57.60624 * 18 17 16 20 20 C 1.42900 * 114.09968 * 298.84364 * 19 18 17 21 21 C 1.53102 * 109.41309 * 61.15714 * 20 19 18 22 22 O 1.43360 * 108.79352 * 24.30652 * 14 13 12 23 23 H 0.96996 * 120.00492 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47102 * 59.99537 * 9 7 2 25 25 H 1.09001 * 109.46676 * 299.99899 * 9 7 2 26 26 H 1.08999 * 110.98061 * 272.13917 * 12 10 9 27 27 H 1.09007 * 110.97764 * 35.91809 * 12 10 9 28 28 H 1.09001 * 109.54201 * 300.45350 * 16 14 13 29 29 H 1.09011 * 109.52386 * 303.05311 * 17 16 14 30 30 H 1.09001 * 109.52901 * 63.24322 * 17 16 14 31 31 H 1.08996 * 109.47676 * 297.62496 * 18 17 16 32 32 H 1.09000 * 109.49175 * 177.59339 * 18 17 16 33 33 H 1.09002 * 109.48173 * 301.17978 * 20 19 18 34 34 H 1.08995 * 109.48295 * 181.14192 * 20 19 18 35 35 H 1.08999 * 109.51856 * 182.48403 * 21 20 19 36 36 H 1.08999 * 109.51974 * 62.29967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 1 3.5887 -3.1973 -0.8259 12 6 5.5691 -2.6739 -0.0608 13 8 5.8584 -3.9454 0.5683 14 6 4.8715 -4.0753 1.6055 15 1 5.2872 -3.7288 2.5518 16 6 4.4540 -5.5413 1.7372 17 6 3.3992 -5.6767 2.8395 18 6 3.0455 -7.1555 3.0178 19 8 4.2293 -7.8929 3.3291 20 6 5.2327 -7.8418 2.3129 21 6 5.6743 -6.3904 2.1063 22 8 3.7308 -3.2787 1.2601 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6802 -0.8889 26 1 5.9180 -2.6610 -1.0934 27 1 6.0029 -1.8502 0.5063 28 1 4.0406 -5.8891 0.7904 29 1 3.7968 -5.2820 3.7746 30 1 2.5053 -5.1197 2.5588 31 1 2.6105 -7.5390 2.0949 32 1 2.3267 -7.2621 3.8302 33 1 4.8263 -8.2342 1.3807 34 1 6.0896 -8.4426 2.6175 35 1 6.4075 -6.3440 1.3011 36 1 6.1178 -6.0102 3.0265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260561352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:11 Heat of formation + Delta-G solvation = -151.621799 kcal Electronic energy + Delta-G solvation = -18141.937442 eV Core-core repulsion = 15204.704045 eV Total energy + Delta-G solvation = -2937.233397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24821 -38.89887 -34.74479 -34.28705 -32.95745 -31.08306 -30.92231 -27.56534 -25.89995 -23.65294 -22.90056 -22.30628 -20.60262 -19.98702 -17.06324 -16.74871 -16.33883 -15.99781 -15.87419 -15.12179 -14.72827 -14.51513 -14.07160 -13.62805 -13.28778 -12.96331 -12.82569 -12.44628 -12.29630 -12.04541 -11.68628 -11.52919 -11.32006 -11.26776 -10.59789 -10.56106 -10.31072 -10.17977 -9.86022 -9.71342 -9.59489 -9.28382 -8.89804 -8.58203 -6.06548 -4.04733 3.26293 3.34839 3.36402 3.79265 3.86133 4.29251 4.40961 4.82110 4.87637 4.91455 5.04994 5.12348 5.23013 5.27750 5.34116 5.41296 5.45068 5.57785 5.64753 5.69898 5.77787 5.83383 5.88976 5.95642 6.11986 6.24282 6.30113 6.38125 6.54989 6.88860 7.16053 7.17271 7.59498 7.73284 8.49585 8.99450 9.53795 11.06926 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036600 B = 0.005705 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.852705 B = 4906.905781 C = 5475.744298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.072 3.928 11 H 0.077 0.923 12 C 0.015 3.985 13 O -0.388 6.388 14 C 0.234 3.766 15 H 0.073 0.927 16 C -0.099 4.099 17 C -0.146 4.146 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.063 3.937 21 C -0.146 4.146 22 O -0.360 6.360 23 H 0.263 0.737 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.354 -11.343 3.117 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.050 4.050 10 C 0.015 3.985 11 H 0.095 0.905 12 C -0.062 4.062 13 O -0.308 6.308 14 C 0.138 3.862 15 H 0.091 0.909 16 C -0.118 4.118 17 C -0.184 4.184 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.014 4.014 21 C -0.184 4.184 22 O -0.281 6.281 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.191 -11.457 3.363 16.365 hybrid contribution 0.362 1.298 -0.358 1.394 sum 11.553 -10.159 3.005 15.675 Atomic orbital electron populations 1.69902 1.06245 1.26867 1.50972 1.25002 0.94755 0.98997 0.94655 0.86822 0.80383 0.83861 0.78468 1.20228 1.21227 1.19121 1.20963 0.88690 0.94730 1.50683 0.90674 1.19736 0.98574 0.89436 0.97263 1.23815 0.91493 0.97194 0.85983 0.90484 1.24584 0.96689 0.85763 0.99124 1.89100 1.53059 1.38633 1.50044 1.23973 0.79579 0.91404 0.91197 0.90922 1.21566 0.96102 0.94180 0.99940 1.22113 1.00303 0.97213 0.98778 1.22599 0.86989 0.90673 1.01146 1.87896 1.26896 1.72018 1.43848 1.22556 0.91400 0.95983 0.91482 1.22127 0.97978 0.95611 1.02636 1.89033 1.37107 1.62626 1.39334 0.92686 0.95549 0.95339 0.87950 0.91012 0.90202 0.91064 0.89230 0.93146 0.88727 0.93277 0.89041 0.90229 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.83 16 7 C -0.51 -14.56 9.55 -34.44 -0.33 -14.89 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.30 3.82 -27.88 -0.11 -0.41 16 10 C 0.07 1.44 3.59 -25.72 -0.09 1.35 16 11 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 12 C 0.01 0.24 7.40 38.17 0.28 0.52 16 13 O -0.39 -6.36 10.78 -59.04 -0.64 -7.00 16 14 C 0.23 3.89 3.50 37.16 0.13 4.02 16 15 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.10 -1.41 2.30 -90.44 -0.21 -1.62 16 17 C -0.15 -2.02 5.24 -26.59 -0.14 -2.15 16 18 C 0.06 0.76 6.84 37.21 0.25 1.01 16 19 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 20 C 0.06 0.69 6.84 37.21 0.25 0.94 16 21 C -0.15 -1.75 5.24 -26.59 -0.14 -1.89 16 22 O -0.36 -7.42 10.22 -59.04 -0.60 -8.03 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 25 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 26 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.10 8.05 -51.92 -0.42 0.69 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.09 1.38 7.81 -51.93 -0.41 0.97 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.93 7.81 -51.93 -0.41 0.53 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -31.33 289.90 -7.15 -38.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.81 Total: -0.86 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.19 Total: -11.26 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -1.62 Total: -20.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.33 -7.15 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.144 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds