Wall clock time and date at job start Mon Mar 30 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99546 * 2 1 4 4 H 1.48496 * 109.47240 * 269.99446 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00017 * 3 2 1 6 6 H 1.48499 * 109.46720 * 149.99636 * 3 2 1 7 7 C 1.37870 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47067 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.62145 * 54.29674 * 10 9 7 12 12 C 1.54913 * 110.84219 * 177.47751 * 10 9 7 13 13 O 1.44783 * 101.72427 * 154.02559 * 12 10 9 14 14 C 1.43759 * 104.81346 * 323.90203 * 13 12 10 15 15 H 1.09006 * 109.62411 * 264.43352 * 14 13 12 16 16 C 1.52998 * 109.63342 * 144.19149 * 14 13 12 17 17 C 1.53170 * 109.54383 * 180.18901 * 16 14 13 18 18 C 1.53095 * 109.16605 * 183.15062 * 17 16 14 19 19 O 1.42906 * 109.41292 * 57.60624 * 18 17 16 20 20 C 1.42900 * 114.09968 * 298.84364 * 19 18 17 21 21 C 1.53102 * 109.41309 * 61.15714 * 20 19 18 22 22 O 1.43360 * 108.79352 * 24.30652 * 14 13 12 23 23 H 0.96996 * 120.00492 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47102 * 59.99537 * 9 7 2 25 25 H 1.09001 * 109.46676 * 299.99899 * 9 7 2 26 26 H 1.08999 * 110.98061 * 272.13917 * 12 10 9 27 27 H 1.09007 * 110.97764 * 35.91809 * 12 10 9 28 28 H 1.09001 * 109.54201 * 300.45350 * 16 14 13 29 29 H 1.09011 * 109.52386 * 303.05311 * 17 16 14 30 30 H 1.09001 * 109.52901 * 63.24322 * 17 16 14 31 31 H 1.08996 * 109.47676 * 297.62496 * 18 17 16 32 32 H 1.09000 * 109.49175 * 177.59339 * 18 17 16 33 33 H 1.09002 * 109.48173 * 301.17978 * 20 19 18 34 34 H 1.08995 * 109.48295 * 181.14192 * 20 19 18 35 35 H 1.08999 * 109.51856 * 182.48403 * 21 20 19 36 36 H 1.08999 * 109.51974 * 62.29967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 1 3.5887 -3.1973 -0.8259 12 6 5.5691 -2.6739 -0.0608 13 8 5.8584 -3.9454 0.5683 14 6 4.8715 -4.0753 1.6055 15 1 5.2872 -3.7288 2.5518 16 6 4.4540 -5.5413 1.7372 17 6 3.3992 -5.6767 2.8395 18 6 3.0455 -7.1555 3.0178 19 8 4.2293 -7.8929 3.3291 20 6 5.2327 -7.8418 2.3129 21 6 5.6743 -6.3904 2.1063 22 8 3.7308 -3.2787 1.2601 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6802 -0.8889 26 1 5.9180 -2.6610 -1.0934 27 1 6.0029 -1.8502 0.5063 28 1 4.0406 -5.8891 0.7904 29 1 3.7968 -5.2820 3.7746 30 1 2.5053 -5.1197 2.5588 31 1 2.6105 -7.5390 2.0949 32 1 2.3267 -7.2621 3.8302 33 1 4.8263 -8.2342 1.3807 34 1 6.0896 -8.4426 2.6175 35 1 6.4075 -6.3440 1.3011 36 1 6.1178 -6.0102 3.0265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260561352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:11 Heat of formation + Delta-G solvation = -173.212875 kcal Electronic energy + Delta-G solvation = -18142.873701 eV Core-core repulsion = 15204.704045 eV Total energy + Delta-G solvation = -2938.169656 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57418 -39.97203 -36.25773 -35.54353 -34.83940 -32.74717 -32.02781 -29.18150 -27.17585 -24.98549 -24.33255 -23.49598 -22.23615 -21.15030 -19.00094 -18.27165 -17.64053 -17.19267 -16.89961 -16.48116 -16.29353 -15.70411 -15.48466 -14.88200 -14.72164 -14.59858 -14.26472 -13.86463 -13.70402 -13.36609 -13.29576 -13.20072 -12.42087 -12.39338 -12.29535 -11.91384 -11.67111 -11.60936 -11.51064 -11.31256 -11.04468 -10.78132 -10.74634 -10.26814 -8.28732 -6.33495 1.35978 1.39235 1.50074 2.35990 2.47870 2.87964 3.02045 3.10733 3.64581 3.71815 3.78159 3.85351 4.02612 4.06231 4.15454 4.27393 4.28802 4.42439 4.60184 4.61166 4.64849 4.71243 4.77757 4.81689 4.87207 4.98143 5.06110 5.12236 5.17397 5.32298 5.38033 5.59583 6.18109 6.22931 6.27818 6.72764 7.29153 8.88623 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036600 B = 0.005705 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.852705 B = 4906.905781 C = 5475.744298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.524 4.524 8 H 0.024 0.976 9 C -0.009 4.009 10 C 0.066 3.934 11 H 0.065 0.935 12 C 0.026 3.974 13 O -0.385 6.385 14 C 0.230 3.770 15 H 0.081 0.919 16 C -0.098 4.098 17 C -0.144 4.144 18 C 0.066 3.934 19 O -0.399 6.399 20 C 0.060 3.940 21 C -0.137 4.137 22 O -0.392 6.392 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.134 0.866 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.100 -11.091 3.115 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.562 4.562 8 H 0.043 0.957 9 C -0.046 4.046 10 C 0.009 3.991 11 H 0.083 0.917 12 C -0.050 4.050 13 O -0.306 6.306 14 C 0.135 3.865 15 H 0.098 0.902 16 C -0.117 4.117 17 C -0.182 4.182 18 C -0.011 4.011 19 O -0.318 6.318 20 C -0.017 4.017 21 C -0.175 4.175 22 O -0.314 6.314 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.963 -11.231 3.357 18.231 hybrid contribution -0.563 1.133 -0.348 1.312 sum 13.400 -10.098 3.008 17.046 Atomic orbital electron populations 1.70078 1.08491 1.28190 1.52646 1.26063 0.95674 1.03671 0.94074 0.85609 0.79437 0.77768 0.79512 1.18413 1.21270 1.16768 1.21258 0.91659 0.92950 1.50362 0.95717 1.19663 0.94879 0.92082 0.98024 1.23717 0.94628 0.95094 0.85666 0.91655 1.24599 0.93148 0.86058 1.01231 1.89098 1.52661 1.38895 1.49905 1.24194 0.78718 0.92226 0.91412 0.90153 1.21561 0.97334 0.93215 0.99560 1.22065 0.99159 0.98344 0.98592 1.22601 0.87260 0.89244 1.01975 1.87888 1.27261 1.71880 1.44734 1.22732 0.91802 0.95545 0.91582 1.22080 0.96736 0.95787 1.02884 1.89009 1.39291 1.63519 1.39581 0.92506 0.95468 0.93089 0.84822 0.89654 0.91331 0.90979 0.91790 0.92750 0.87388 0.92644 0.86608 0.89587 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.44 0.30 -60.23 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 43.42 27.47 68.60 1.88 45.31 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 7 C -0.52 -30.63 9.55 25.60 0.24 -30.38 16 8 H 0.02 1.63 7.99 -2.91 -0.02 1.61 16 9 C -0.01 -0.42 3.82 29.85 0.11 -0.31 16 10 C 0.07 2.61 3.59 31.25 0.11 2.72 16 11 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 12 C 0.03 0.75 7.40 72.64 0.54 1.29 16 13 O -0.38 -11.78 10.78 -126.22 -1.36 -13.14 16 14 C 0.23 7.45 3.50 71.98 0.25 7.70 16 15 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 16 C -0.10 -2.74 2.30 -10.68 -0.02 -2.77 16 17 C -0.14 -3.99 5.24 30.68 0.16 -3.83 16 18 C 0.07 1.54 6.84 72.01 0.49 2.04 16 19 O -0.40 -9.61 10.77 -148.98 -1.60 -11.21 16 20 C 0.06 1.17 6.84 72.02 0.49 1.66 16 21 C -0.14 -3.02 5.24 30.69 0.16 -2.86 16 22 O -0.39 -16.42 10.22 -126.22 -1.29 -17.71 16 23 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 24 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 25 H 0.05 2.11 7.57 -2.39 -0.02 2.09 16 26 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.09 2.32 8.05 -2.38 -0.02 2.30 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 2.08 7.81 -2.39 -0.02 2.07 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.80 7.81 -2.39 -0.02 1.78 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.38 289.90 1.92 -67.46 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.98 Total: 13.70 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.01 Total: -24.17 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.30 Total: -60.23 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -4.26 Total: -42.06 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Total: -69.38 1.92 -67.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.754 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds