Wall clock time and date at job start Mon Mar 30 2020 03:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47954 * 110.99858 * 2 1 4 4 C 1.53940 * 86.18025 * 222.41543 * 3 2 1 5 5 N 1.46898 * 113.73263 * 138.07923 * 4 3 2 6 6 C 1.46456 * 110.94401 * 53.82163 * 5 4 3 7 7 C 1.53249 * 109.86972 * 197.56672 * 6 5 4 8 8 S 1.81897 * 108.66568 * 298.30348 * 7 6 5 9 9 C 1.81893 * 101.91717 * 51.20737 * 8 7 6 10 10 H 1.09003 * 109.63396 * 68.39688 * 9 8 7 11 11 C 1.50694 * 109.63722 * 188.78803 * 9 8 7 12 12 H 1.08003 * 120.00489 * 119.99406 * 11 9 8 13 13 C 1.37880 * 120.00078 * 300.00458 * 11 9 8 14 14 N 1.31513 * 120.00013 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00259 * 179.97438 * 13 11 9 16 16 H 1.48510 * 109.47094 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47344 * 119.99657 * 15 13 11 18 18 H 1.48499 * 109.47446 * 240.00019 * 15 13 11 19 19 C 1.46469 * 110.99912 * 180.02562 * 5 4 3 20 20 C 1.47961 * 110.99672 * 260.64178 * 2 1 3 21 21 H 1.09007 * 109.46763 * 59.99917 * 1 2 3 22 22 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47282 * 300.00416 * 1 2 3 24 24 H 1.09001 * 113.76057 * 108.10038 * 3 2 1 25 25 H 1.08995 * 113.86301 * 336.74431 * 3 2 1 26 26 H 1.08999 * 113.73469 * 269.25891 * 4 3 2 27 27 H 1.08994 * 109.23356 * 77.54578 * 6 5 4 28 28 H 1.09006 * 109.57141 * 317.79147 * 6 5 4 29 29 H 1.09002 * 109.63269 * 178.49984 * 7 6 5 30 30 H 1.08995 * 109.63165 * 58.10725 * 7 6 5 31 31 H 0.96994 * 120.00483 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.40490 * 42.11718 * 19 5 4 33 33 H 1.08999 * 109.40390 * 282.35047 * 19 5 4 34 34 H 1.08994 * 113.76356 * 23.26314 * 20 2 1 35 35 H 1.09009 * 113.75633 * 251.89849 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 7 3.2516 1.8179 -2.1422 6 6 3.6188 3.1426 -1.6367 7 6 3.4284 4.1914 -2.7378 8 16 4.5309 3.7846 -4.1262 9 6 4.1331 2.0345 -4.4215 10 1 3.1203 1.9506 -4.8157 11 6 5.1107 1.4527 -5.4097 12 1 5.7330 0.6169 -5.1256 13 6 5.2109 1.9874 -6.6767 14 7 4.4529 3.0048 -7.0228 15 14 6.4232 1.2667 -7.9015 16 1 7.1521 0.1371 -7.2703 17 1 5.6885 0.7768 -9.0954 18 1 7.3933 2.3133 -8.3122 19 6 4.2308 1.2817 -3.0903 20 6 1.9992 -0.2246 -1.3630 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.4460 1.6802 0.9483 25 1 1.3023 2.1211 -0.3936 26 1 3.9459 0.5067 -0.5953 27 1 4.6629 3.1309 -1.3243 28 1 2.9894 3.3951 -0.7833 29 1 3.6773 5.1791 -2.3497 30 1 2.3928 4.1817 -3.0776 31 1 4.5230 3.3808 -7.9142 32 1 4.0313 0.2232 -3.2571 33 1 5.2339 1.4000 -2.6807 34 1 1.3010 0.0440 -2.1556 35 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:30 Heat of formation + Delta-G solvation = 41.793985 kcal Electronic energy + Delta-G solvation = -15931.318483 eV Core-core repulsion = 13477.517846 eV Total energy + Delta-G solvation = -2453.800637 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00647 -36.53743 -33.36052 -30.69277 -30.41289 -28.00950 -26.21297 -24.73366 -23.04671 -21.73328 -20.34662 -19.35514 -17.02431 -15.95808 -15.74609 -15.16587 -15.02155 -14.62101 -14.00312 -13.54168 -13.17045 -12.86136 -12.80744 -12.56054 -12.23323 -12.17941 -11.53126 -11.33037 -11.13174 -11.02281 -10.86073 -10.60932 -10.49434 -10.12799 -9.81951 -9.29849 -8.86489 -8.57981 -8.25193 -7.87549 -6.30593 -5.88145 -4.22946 3.13460 3.31326 3.34632 3.36131 3.92287 4.22040 4.29511 4.38722 4.56157 5.06561 5.14401 5.30814 5.32043 5.42411 5.55478 5.60253 5.65599 5.74905 5.79415 5.85829 5.93522 6.08053 6.16363 6.20937 6.27782 6.35276 6.55507 6.72553 7.01691 7.27946 7.53441 7.59442 7.75817 8.06557 8.71884 9.34754 10.86107 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.006684 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.640458 B = 4188.001031 C = 4701.590423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C 0.008 3.992 4 C 0.056 3.944 5 N -0.543 5.543 6 C 0.066 3.934 7 C -0.100 4.100 8 S -0.303 6.303 9 C 0.122 3.878 10 H 0.048 0.952 11 C -0.500 4.500 12 H 0.069 0.931 13 C 0.071 3.929 14 N -0.837 5.837 15 Si 0.898 3.102 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.070 3.930 20 C 0.015 3.985 21 H 0.037 0.963 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 -2.899 11.002 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.121 4.121 4 C -0.054 4.054 5 N -0.269 5.269 6 C -0.063 4.063 7 C -0.249 4.249 8 S -0.072 6.072 9 C -0.003 4.003 10 H 0.066 0.934 11 C -0.544 4.544 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.471 5.471 15 Si 0.725 3.275 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.059 4.059 20 C -0.114 4.114 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.683 -2.426 10.653 11.887 hybrid contribution 0.102 -0.490 -0.321 0.595 sum -4.580 -2.916 10.332 11.671 Atomic orbital electron populations 1.22825 0.89699 1.02150 1.01029 1.68416 1.09073 1.18508 1.25114 1.24047 0.97320 0.91693 0.99043 1.23451 0.96840 0.93740 0.91333 1.61452 1.48907 1.01937 1.14584 1.22102 0.98776 0.88984 0.96446 1.23332 1.03414 0.99321 0.98795 1.87668 1.54787 1.25615 1.39172 1.20738 0.99971 0.87540 0.92071 0.93442 1.20858 1.22122 1.15913 0.95540 0.91322 1.25126 0.95756 0.94634 0.98435 1.70072 1.36461 1.21066 1.19500 0.86419 0.80947 0.79239 0.80868 1.19425 1.20696 1.20667 1.22403 0.91876 0.98700 0.92913 1.24065 0.97242 0.99370 0.90706 0.94420 0.91356 0.91700 0.89841 0.90435 0.91155 0.94460 0.91698 0.90078 0.91111 0.92477 0.91197 0.94716 0.90047 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.49 -6.34 6.56 -246.75 -1.62 -7.96 16 3 C 0.01 0.10 6.21 -2.77 -0.02 0.08 16 4 C 0.06 0.82 3.35 -69.40 -0.23 0.59 16 5 N -0.54 -9.66 4.37 -228.48 -1.00 -10.65 16 6 C 0.07 1.13 5.32 -3.94 -0.02 1.11 16 7 C -0.10 -1.93 6.68 37.29 0.25 -1.68 16 8 S -0.30 -7.49 20.40 -107.50 -2.19 -9.69 16 9 C 0.12 3.05 2.66 -27.76 -0.07 2.98 16 10 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 11 C -0.50 -13.39 8.59 -34.44 -0.30 -13.68 16 12 H 0.07 1.78 7.75 -52.48 -0.41 1.38 16 13 C 0.07 1.91 5.28 -17.82 -0.09 1.82 16 14 N -0.84 -23.76 12.19 55.43 0.68 -23.08 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.07 1.45 4.65 -3.94 -0.02 1.43 16 20 C 0.02 0.21 7.55 -2.77 -0.02 0.19 16 21 H 0.04 0.42 7.62 -51.93 -0.40 0.03 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.01 7.63 -51.93 -0.40 0.61 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 28 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 33 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.08 1.20 7.62 -51.93 -0.40 0.81 16 35 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -28.39 288.38 -10.42 -38.82 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.67 Total: -0.76 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 0.06 Total: -6.67 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -1.94 Total: -41.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -2.19 Total: -9.69 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.39 -10.42 -38.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.609 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds