Wall clock time and date at job start Mon Mar 30 2020 03:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47954 * 110.99858 * 2 1 4 4 C 1.53940 * 86.18025 * 222.41543 * 3 2 1 5 5 N 1.46898 * 113.73263 * 138.07923 * 4 3 2 6 6 C 1.46456 * 110.94401 * 53.82163 * 5 4 3 7 7 C 1.53249 * 109.86972 * 197.56672 * 6 5 4 8 8 S 1.81897 * 108.66568 * 298.30348 * 7 6 5 9 9 C 1.81893 * 101.91717 * 51.20737 * 8 7 6 10 10 H 1.09003 * 109.63396 * 68.39688 * 9 8 7 11 11 C 1.50694 * 109.63722 * 188.78803 * 9 8 7 12 12 H 1.08003 * 120.00489 * 119.99406 * 11 9 8 13 13 C 1.37880 * 120.00078 * 300.00458 * 11 9 8 14 14 N 1.31513 * 120.00013 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00259 * 179.97438 * 13 11 9 16 16 H 1.48510 * 109.47094 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47344 * 119.99657 * 15 13 11 18 18 H 1.48499 * 109.47446 * 240.00019 * 15 13 11 19 19 C 1.46469 * 110.99912 * 180.02562 * 5 4 3 20 20 C 1.47961 * 110.99672 * 260.64178 * 2 1 3 21 21 H 1.09007 * 109.46763 * 59.99917 * 1 2 3 22 22 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47282 * 300.00416 * 1 2 3 24 24 H 1.09001 * 113.76057 * 108.10038 * 3 2 1 25 25 H 1.08995 * 113.86301 * 336.74431 * 3 2 1 26 26 H 1.08999 * 113.73469 * 269.25891 * 4 3 2 27 27 H 1.08994 * 109.23356 * 77.54578 * 6 5 4 28 28 H 1.09006 * 109.57141 * 317.79147 * 6 5 4 29 29 H 1.09002 * 109.63269 * 178.49984 * 7 6 5 30 30 H 1.08995 * 109.63165 * 58.10725 * 7 6 5 31 31 H 0.96994 * 120.00483 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.40490 * 42.11718 * 19 5 4 33 33 H 1.08999 * 109.40390 * 282.35047 * 19 5 4 34 34 H 1.08994 * 113.76356 * 23.26314 * 20 2 1 35 35 H 1.09009 * 113.75633 * 251.89849 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 7 3.2516 1.8179 -2.1422 6 6 3.6188 3.1426 -1.6367 7 6 3.4284 4.1914 -2.7378 8 16 4.5309 3.7846 -4.1262 9 6 4.1331 2.0345 -4.4215 10 1 3.1203 1.9506 -4.8157 11 6 5.1107 1.4527 -5.4097 12 1 5.7330 0.6169 -5.1256 13 6 5.2109 1.9874 -6.6767 14 7 4.4529 3.0048 -7.0228 15 14 6.4232 1.2667 -7.9015 16 1 7.1521 0.1371 -7.2703 17 1 5.6885 0.7768 -9.0954 18 1 7.3933 2.3133 -8.3122 19 6 4.2308 1.2817 -3.0903 20 6 1.9992 -0.2246 -1.3630 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.4460 1.6802 0.9483 25 1 1.3023 2.1211 -0.3936 26 1 3.9459 0.5067 -0.5953 27 1 4.6629 3.1309 -1.3243 28 1 2.9894 3.3951 -0.7833 29 1 3.6773 5.1791 -2.3497 30 1 2.3928 4.1817 -3.0776 31 1 4.5230 3.3808 -7.9142 32 1 4.0313 0.2232 -3.2571 33 1 5.2339 1.4000 -2.6807 34 1 1.3010 0.0440 -2.1556 35 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:30 Heat of formation + Delta-G solvation = 21.416260 kcal Electronic energy + Delta-G solvation = -15932.202127 eV Core-core repulsion = 13477.517846 eV Total energy + Delta-G solvation = -2454.684281 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13481 -37.95711 -35.32314 -32.26485 -31.85900 -29.41590 -27.39964 -26.43683 -24.20716 -23.37604 -21.93476 -20.53069 -18.84089 -17.56374 -16.88485 -16.74774 -16.52057 -16.20126 -15.32080 -14.85260 -14.73306 -14.51121 -14.31413 -13.95452 -13.63767 -13.60963 -12.95572 -12.88437 -12.83178 -12.47041 -12.33056 -11.98031 -11.89215 -11.65775 -11.54078 -11.17285 -10.56591 -10.12691 -9.88011 -9.30979 -8.33186 -7.87487 -6.34628 1.31670 1.42350 1.54521 1.57357 2.34236 2.44799 2.76983 3.09317 3.25839 3.43824 4.00915 4.06320 4.15162 4.21167 4.32695 4.45886 4.51232 4.53503 4.55262 4.59703 4.69847 4.75534 4.79833 4.96042 4.97713 5.01703 5.08082 5.30585 5.34303 5.61913 5.92518 6.01960 6.18019 6.20172 6.65905 7.27697 8.82373 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.006684 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.640458 B = 4188.001031 C = 4701.590423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.492 5.492 3 C 0.018 3.982 4 C 0.050 3.950 5 N -0.550 5.550 6 C 0.071 3.929 7 C -0.080 4.080 8 S -0.368 6.368 9 C 0.130 3.870 10 H 0.009 0.991 11 C -0.523 4.523 12 H 0.070 0.930 13 C 0.023 3.977 14 N -0.873 5.873 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.282 1.282 19 C 0.087 3.913 20 C 0.016 3.984 21 H 0.033 0.967 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.265 0.735 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -3.347 12.785 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.215 5.215 3 C -0.111 4.111 4 C -0.058 4.058 5 N -0.275 5.275 6 C -0.058 4.058 7 C -0.229 4.229 8 S -0.138 6.138 9 C 0.004 3.996 10 H 0.027 0.973 11 C -0.566 4.566 12 H 0.088 0.912 13 C -0.184 4.184 14 N -0.508 5.508 15 Si 0.789 3.211 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.208 1.208 19 C -0.043 4.043 20 C -0.113 4.113 21 H 0.051 0.949 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.937 -2.899 12.450 13.704 hybrid contribution 0.086 -0.308 -0.782 0.845 sum -4.851 -3.207 11.668 13.037 Atomic orbital electron populations 1.22873 0.88355 1.02942 1.01544 1.68430 1.10444 1.18580 1.23999 1.24046 0.96321 0.91691 0.99003 1.23573 0.97543 0.93718 0.91011 1.61384 1.47588 1.02909 1.15669 1.22088 0.99502 0.87863 0.96384 1.23372 1.01217 1.01453 0.96816 1.87636 1.56906 1.26188 1.43106 1.20538 0.97246 0.87710 0.94090 0.97324 1.21199 1.22503 1.16320 0.96539 0.91166 1.25926 0.97357 0.94845 1.00231 1.70209 1.38246 1.22517 1.19866 0.85398 0.78628 0.78532 0.78549 1.18430 1.20013 1.20835 1.22054 0.92276 0.98282 0.91680 1.24020 0.96876 0.99306 0.91137 0.94872 0.90546 0.90158 0.87966 0.90318 0.90965 0.94761 0.87898 0.87590 0.91592 0.92596 0.90775 0.95505 0.91209 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.08 16 2 N -0.49 -11.43 6.56 -934.59 -6.13 -17.56 16 3 C 0.02 0.40 6.21 86.41 0.54 0.94 16 4 C 0.05 1.38 3.35 46.48 0.16 1.53 16 5 N -0.55 -18.81 4.37 -876.77 -3.83 -22.63 16 6 C 0.07 2.24 5.32 86.47 0.46 2.70 16 7 C -0.08 -2.98 6.68 72.07 0.48 -2.49 16 8 S -0.37 -18.46 20.40 -56.49 -1.15 -19.61 16 9 C 0.13 6.65 2.66 29.93 0.08 6.73 16 10 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 11 C -0.52 -28.58 8.59 25.60 0.22 -28.36 16 12 H 0.07 3.70 7.75 -2.91 -0.02 3.68 16 13 C 0.02 1.26 5.28 84.66 0.45 1.71 16 14 N -0.87 -50.96 12.19 21.45 0.26 -50.70 16 15 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.09 3.58 4.65 86.46 0.40 3.98 16 20 C 0.02 0.41 7.55 86.41 0.65 1.07 16 21 H 0.03 0.67 7.62 -2.38 -0.02 0.65 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 1.76 7.63 -2.39 -0.02 1.75 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.13 7.92 -2.39 -0.02 1.12 16 28 H 0.10 2.55 6.38 -2.38 -0.02 2.53 16 29 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.07 2.95 7.79 -2.39 -0.02 2.93 16 33 H 0.03 1.14 7.92 -2.39 -0.02 1.12 16 34 H 0.07 1.99 7.62 -2.39 -0.02 1.98 16 35 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -62.14 288.38 -3.11 -65.25 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.05 Total: 11.36 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.67 Total: -11.12 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -9.69 Total: -90.89 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -18.46 SS G_CDS: -1.15 Total: -19.61 kcal Total: -62.14 -3.11 -65.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.664 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds