Wall clock time and date at job start Mon Mar 30 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47956 * 110.99831 * 2 1 4 4 C 1.53928 * 86.17940 * 222.41750 * 3 2 1 5 5 N 1.46905 * 113.73521 * 138.07986 * 4 3 2 6 6 C 1.46471 * 111.00118 * 193.11927 * 5 4 3 7 7 C 1.53249 * 109.85634 * 162.23529 * 6 5 4 8 8 S 1.81898 * 108.50834 * 62.00409 * 7 6 5 9 9 C 1.81899 * 101.91407 * 308.69325 * 8 7 6 10 10 H 1.08999 * 109.63061 * 291.59953 * 9 8 7 11 11 C 1.50701 * 109.79570 * 171.10419 * 9 8 7 12 12 H 1.07993 * 119.99927 * 240.49495 * 11 9 8 13 13 C 1.37879 * 119.99494 * 60.49648 * 11 9 8 14 14 N 1.31512 * 120.00394 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99791 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47132 * 59.99694 * 15 13 11 17 17 H 1.48499 * 109.47364 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46955 * 299.99960 * 15 13 11 19 19 C 1.46473 * 110.99666 * 67.13932 * 5 4 3 20 20 C 1.47958 * 110.99854 * 260.63844 * 2 1 3 21 21 H 1.09004 * 109.47244 * 60.00073 * 1 2 3 22 22 H 1.09007 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47188 * 299.99828 * 1 2 3 24 24 H 1.08998 * 113.76008 * 108.10061 * 3 2 1 25 25 H 1.09003 * 113.86547 * 336.74925 * 3 2 1 26 26 H 1.09003 * 113.73774 * 269.25798 * 4 3 2 27 27 H 1.08996 * 109.40298 * 282.35147 * 6 5 4 28 28 H 1.08995 * 109.40435 * 42.19665 * 6 5 4 29 29 H 1.09002 * 109.63001 * 181.71107 * 7 6 5 30 30 H 1.09004 * 109.63207 * 302.09715 * 7 6 5 31 31 H 0.97000 * 119.99953 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.40464 * 77.65257 * 19 5 4 33 33 H 1.08995 * 109.40478 * 317.88201 * 19 5 4 34 34 H 1.09008 * 113.75639 * 23.27150 * 20 2 1 35 35 H 1.08990 * 113.76210 * 251.90073 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0360 5 7 3.2515 1.8180 -2.1422 6 6 3.9786 1.1711 -3.2368 7 6 3.8244 1.9926 -4.5213 8 16 4.5578 3.6346 -4.2480 9 6 3.7510 4.1537 -2.7025 10 1 2.6912 4.3315 -2.8845 11 6 4.3953 5.4158 -2.1894 12 1 4.8696 5.4240 -1.2193 13 6 4.3791 6.5599 -2.9587 14 7 3.8019 6.5497 -4.1403 15 14 5.1782 8.1241 -2.3230 16 1 6.6218 7.8777 -2.0768 17 1 5.0247 9.2035 -3.3313 18 1 4.5229 8.5348 -1.0552 19 6 3.9153 3.0347 -1.6684 20 6 1.9992 -0.2247 -1.3629 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.4459 1.6802 0.9482 25 1 1.3022 2.1212 -0.3935 26 1 3.9458 0.5068 -0.5953 27 1 5.0348 1.0993 -2.9774 28 1 3.5763 0.1709 -3.3975 29 1 4.3413 1.4924 -5.3402 30 1 2.7670 2.0965 -4.7649 31 1 3.7908 7.3546 -4.6816 32 1 4.9759 2.8334 -1.5180 33 1 3.4693 3.3461 -0.7239 34 1 1.3009 0.0441 -2.1556 35 1 2.4459 -1.2088 -1.5037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:33 Heat of formation + Delta-G solvation = 40.938233 kcal Electronic energy + Delta-G solvation = -15946.416953 eV Core-core repulsion = 13492.579208 eV Total energy + Delta-G solvation = -2453.837745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97927 -36.54365 -33.35900 -30.71606 -30.37686 -27.99186 -26.19731 -24.72298 -23.07144 -21.65152 -20.35780 -19.38031 -17.01436 -15.96298 -15.70940 -15.16335 -15.03533 -14.60853 -14.00393 -13.53269 -13.16031 -12.84977 -12.79979 -12.56218 -12.22488 -12.17022 -11.53840 -11.32745 -11.13664 -10.98778 -10.85008 -10.62185 -10.48602 -10.12968 -9.81850 -9.32450 -8.85831 -8.57869 -8.25042 -7.88474 -6.30174 -5.89089 -4.23250 3.14853 3.30406 3.32153 3.36826 3.93769 4.22921 4.28434 4.39612 4.56532 5.10199 5.15354 5.30956 5.32840 5.43204 5.56200 5.63452 5.70290 5.75810 5.80635 5.83675 5.93983 6.06440 6.19041 6.21863 6.28539 6.34945 6.56015 6.72290 7.02914 7.27298 7.53929 7.58662 7.75481 8.06277 8.71157 9.34373 10.86016 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.006953 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.654412 B = 4026.066086 C = 4619.877132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C 0.013 3.987 4 C 0.055 3.945 5 N -0.543 5.543 6 C 0.067 3.933 7 C -0.099 4.099 8 S -0.305 6.305 9 C 0.123 3.877 10 H 0.048 0.952 11 C -0.502 4.502 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.837 5.837 15 Si 0.899 3.101 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.069 3.931 20 C 0.012 3.988 21 H 0.037 0.963 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -10.548 4.747 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.116 4.116 4 C -0.054 4.054 5 N -0.268 5.268 6 C -0.062 4.062 7 C -0.248 4.248 8 S -0.075 6.075 9 C -0.002 4.002 10 H 0.066 0.934 11 C -0.545 4.545 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.471 5.471 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.060 4.060 20 C -0.117 4.117 21 H 0.056 0.944 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.278 -10.272 4.228 11.582 hybrid contribution -0.063 0.515 0.524 0.738 sum -3.340 -9.757 4.753 11.355 Atomic orbital electron populations 1.22826 0.89667 1.01957 1.01256 1.68411 1.09114 1.19148 1.24443 1.24005 0.97164 0.91250 0.99157 1.23435 0.96777 0.93151 0.92065 1.61545 1.51169 1.05931 1.08164 1.22085 0.96183 0.96490 0.91471 1.23326 1.03683 0.99770 0.97974 1.87659 1.61720 1.14640 1.43464 1.20728 0.98057 0.93119 0.88297 0.93447 1.20786 1.37650 0.92738 1.03363 0.91428 1.25122 0.94778 0.99269 0.94739 1.70054 1.39290 1.28481 1.09267 0.86536 0.80103 0.82109 0.78711 1.19886 1.20968 1.19906 1.22407 0.95921 0.88840 0.98846 1.24052 0.97363 0.99010 0.91273 0.94416 0.91509 0.91507 0.89610 0.90006 0.91398 0.94389 0.91852 0.90070 0.91070 0.92355 0.94740 0.91175 0.90321 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -6.41 6.56 -246.79 -1.62 -8.03 16 3 C 0.01 0.18 6.71 -2.77 -0.02 0.16 16 4 C 0.05 0.82 3.35 -69.42 -0.23 0.58 16 5 N -0.54 -9.64 4.35 -228.47 -0.99 -10.64 16 6 C 0.07 1.15 5.35 -3.93 -0.02 1.13 16 7 C -0.10 -1.91 6.69 37.29 0.25 -1.66 16 8 S -0.31 -7.55 20.46 -107.50 -2.20 -9.75 16 9 C 0.12 3.07 2.65 -27.75 -0.07 3.00 16 10 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 11 C -0.50 -13.40 8.58 -34.44 -0.30 -13.69 16 12 H 0.07 1.74 7.75 -52.49 -0.41 1.34 16 13 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 14 N -0.84 -23.74 12.23 55.43 0.68 -23.06 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.07 1.42 4.58 -3.92 -0.02 1.40 16 20 C 0.01 0.16 6.85 -2.77 -0.02 0.14 16 21 H 0.04 0.43 7.62 -51.93 -0.40 0.03 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 28 H 0.06 0.92 7.25 -51.93 -0.38 0.55 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.03 0.73 7.91 -51.93 -0.41 0.32 16 33 H 0.07 1.38 7.12 -51.93 -0.37 1.01 16 34 H 0.08 1.06 7.62 -51.92 -0.40 0.66 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -28.29 288.70 -10.44 -38.74 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.69 Total: -0.63 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 0.06 Total: -6.61 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -1.93 Total: -41.73 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -2.20 Total: -9.75 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.29 -10.44 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.675 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds