Wall clock time and date at job start Mon Mar 30 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47956 * 110.99831 * 2 1 4 4 C 1.53928 * 86.17940 * 222.41750 * 3 2 1 5 5 N 1.46905 * 113.73521 * 138.07986 * 4 3 2 6 6 C 1.46471 * 111.00118 * 193.11927 * 5 4 3 7 7 C 1.53249 * 109.85634 * 162.23529 * 6 5 4 8 8 S 1.81898 * 108.50834 * 62.00409 * 7 6 5 9 9 C 1.81899 * 101.91407 * 308.69325 * 8 7 6 10 10 H 1.08999 * 109.63061 * 291.59953 * 9 8 7 11 11 C 1.50701 * 109.79570 * 171.10419 * 9 8 7 12 12 H 1.07993 * 119.99927 * 240.49495 * 11 9 8 13 13 C 1.37879 * 119.99494 * 60.49648 * 11 9 8 14 14 N 1.31512 * 120.00394 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99791 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47132 * 59.99694 * 15 13 11 17 17 H 1.48499 * 109.47364 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46955 * 299.99960 * 15 13 11 19 19 C 1.46473 * 110.99666 * 67.13932 * 5 4 3 20 20 C 1.47958 * 110.99854 * 260.63844 * 2 1 3 21 21 H 1.09004 * 109.47244 * 60.00073 * 1 2 3 22 22 H 1.09007 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47188 * 299.99828 * 1 2 3 24 24 H 1.08998 * 113.76008 * 108.10061 * 3 2 1 25 25 H 1.09003 * 113.86547 * 336.74925 * 3 2 1 26 26 H 1.09003 * 113.73774 * 269.25798 * 4 3 2 27 27 H 1.08996 * 109.40298 * 282.35147 * 6 5 4 28 28 H 1.08995 * 109.40435 * 42.19665 * 6 5 4 29 29 H 1.09002 * 109.63001 * 181.71107 * 7 6 5 30 30 H 1.09004 * 109.63207 * 302.09715 * 7 6 5 31 31 H 0.97000 * 119.99953 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.40464 * 77.65257 * 19 5 4 33 33 H 1.08995 * 109.40478 * 317.88201 * 19 5 4 34 34 H 1.09008 * 113.75639 * 23.27150 * 20 2 1 35 35 H 1.08990 * 113.76210 * 251.90073 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0360 5 7 3.2515 1.8180 -2.1422 6 6 3.9786 1.1711 -3.2368 7 6 3.8244 1.9926 -4.5213 8 16 4.5578 3.6346 -4.2480 9 6 3.7510 4.1537 -2.7025 10 1 2.6912 4.3315 -2.8845 11 6 4.3953 5.4158 -2.1894 12 1 4.8696 5.4240 -1.2193 13 6 4.3791 6.5599 -2.9587 14 7 3.8019 6.5497 -4.1403 15 14 5.1782 8.1241 -2.3230 16 1 6.6218 7.8777 -2.0768 17 1 5.0247 9.2035 -3.3313 18 1 4.5229 8.5348 -1.0552 19 6 3.9153 3.0347 -1.6684 20 6 1.9992 -0.2247 -1.3629 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.4459 1.6802 0.9482 25 1 1.3022 2.1212 -0.3935 26 1 3.9458 0.5068 -0.5953 27 1 5.0348 1.0993 -2.9774 28 1 3.5763 0.1709 -3.3975 29 1 4.3413 1.4924 -5.3402 30 1 2.7670 2.0965 -4.7649 31 1 3.7908 7.3546 -4.6816 32 1 4.9759 2.8334 -1.5180 33 1 3.4693 3.3461 -0.7239 34 1 1.3009 0.0441 -2.1556 35 1 2.4459 -1.2088 -1.5037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:33 Heat of formation + Delta-G solvation = 20.675990 kcal Electronic energy + Delta-G solvation = -15947.295590 eV Core-core repulsion = 13492.579208 eV Total energy + Delta-G solvation = -2454.716382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11787 -37.96577 -35.32078 -32.26037 -31.86239 -29.39645 -27.40620 -26.42506 -24.23737 -23.31261 -21.93001 -20.56161 -18.83692 -17.55776 -16.85628 -16.73851 -16.56336 -16.19679 -15.30994 -14.85144 -14.71624 -14.51269 -14.32345 -13.94891 -13.67635 -13.57512 -12.95891 -12.91144 -12.78085 -12.49895 -12.33718 -11.95571 -11.89096 -11.65483 -11.55702 -11.18374 -10.55674 -10.12948 -9.88824 -9.32022 -8.32552 -7.88307 -6.34627 1.33640 1.42197 1.51846 1.58297 2.34405 2.44893 2.77445 3.09788 3.26162 3.42686 4.01517 4.07172 4.15318 4.21613 4.32426 4.46079 4.52274 4.52574 4.54574 4.61870 4.71191 4.75625 4.78318 4.95707 4.97911 5.01200 5.09918 5.30023 5.33725 5.61486 5.92285 6.01406 6.17304 6.20794 6.65597 7.27652 8.82248 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.006953 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.654412 B = 4026.066086 C = 4619.877132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.491 5.491 3 C 0.013 3.987 4 C 0.051 3.949 5 N -0.549 5.549 6 C 0.071 3.929 7 C -0.079 4.079 8 S -0.370 6.370 9 C 0.131 3.869 10 H 0.009 0.991 11 C -0.525 4.525 12 H 0.071 0.929 13 C 0.023 3.977 14 N -0.873 5.873 15 Si 0.964 3.036 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.262 1.262 19 C 0.086 3.914 20 C 0.022 3.978 21 H 0.033 0.967 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -12.155 5.631 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.214 5.214 3 C -0.116 4.116 4 C -0.058 4.058 5 N -0.275 5.275 6 C -0.058 4.058 7 C -0.227 4.227 8 S -0.141 6.141 9 C 0.005 3.995 10 H 0.027 0.973 11 C -0.567 4.567 12 H 0.089 0.911 13 C -0.183 4.183 14 N -0.508 5.508 15 Si 0.788 3.212 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.044 4.044 20 C -0.107 4.107 21 H 0.052 0.948 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.338 -11.889 5.140 13.376 hybrid contribution -0.110 0.897 0.215 0.929 sum -3.448 -10.992 5.354 12.704 Atomic orbital electron populations 1.22874 0.88413 1.03043 1.01397 1.68432 1.10399 1.18068 1.24458 1.23963 0.96813 0.91669 0.99136 1.23562 0.97507 0.93308 0.91396 1.61481 1.50610 1.05917 1.09481 1.22067 0.96317 0.97463 0.89929 1.23364 1.02936 0.96127 1.00306 1.87631 1.62534 1.19777 1.44171 1.20530 0.95287 0.94595 0.89060 0.97341 1.21148 1.37843 0.94003 1.03721 0.91134 1.25928 0.95187 1.02414 0.94802 1.70197 1.40924 1.29148 1.10533 0.85517 0.79079 0.78170 0.78432 1.19635 1.20796 1.18684 1.22055 0.95683 0.89084 0.97561 1.24037 0.96395 0.99089 0.91162 0.94844 0.89927 0.90878 0.89059 0.91361 0.90898 0.94701 0.88090 0.87607 0.91534 0.92576 0.95576 0.90634 0.90633 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.49 -11.59 6.56 -934.70 -6.13 -17.72 16 3 C 0.01 0.35 6.71 86.40 0.58 0.93 16 4 C 0.05 1.39 3.35 46.48 0.16 1.55 16 5 N -0.55 -18.76 4.35 -876.74 -3.81 -22.58 16 6 C 0.07 2.28 5.35 86.47 0.46 2.74 16 7 C -0.08 -2.93 6.69 72.07 0.48 -2.45 16 8 S -0.37 -18.60 20.46 -56.49 -1.16 -19.75 16 9 C 0.13 6.69 2.65 29.93 0.08 6.77 16 10 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 11 C -0.52 -28.60 8.58 25.60 0.22 -28.38 16 12 H 0.07 3.68 7.75 -2.91 -0.02 3.66 16 13 C 0.02 1.28 5.29 84.66 0.45 1.73 16 14 N -0.87 -50.92 12.23 21.45 0.26 -50.66 16 15 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 C 0.09 3.53 4.58 86.47 0.40 3.92 16 20 C 0.02 0.50 6.85 86.41 0.59 1.10 16 21 H 0.03 0.70 7.62 -2.38 -0.02 0.68 16 22 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 1.99 7.93 -2.39 -0.02 1.97 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 28 H 0.10 2.53 7.25 -2.39 -0.02 2.51 16 29 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.03 1.11 7.91 -2.39 -0.02 1.09 16 33 H 0.08 2.98 7.12 -2.39 -0.02 2.96 16 34 H 0.08 1.81 7.62 -2.38 -0.02 1.79 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -61.88 288.70 -3.12 -65.00 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.04 Total: 11.86 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.65 Total: -11.03 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -9.68 Total: -90.95 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -18.60 SS G_CDS: -1.16 Total: -19.75 kcal Total: -61.88 -3.12 -65.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.676 kcal (2) G-P(sol) polarization free energy of solvation -61.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds