Wall clock time and date at job start Mon Mar 30 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47963 * 111.00131 * 2 1 4 4 C 1.53935 * 86.17808 * 222.41330 * 3 2 1 5 5 N 1.46904 * 113.73041 * 138.08077 * 4 3 2 6 6 C 1.46468 * 110.99836 * 300.60971 * 5 4 3 7 7 C 1.53245 * 109.85931 * 162.23744 * 6 5 4 8 8 S 1.81895 * 108.51059 * 62.00303 * 7 6 5 9 9 C 1.81901 * 101.91053 * 308.69426 * 8 7 6 10 10 C 1.46464 * 111.00163 * 174.62989 * 5 4 3 11 11 H 1.08999 * 109.40818 * 77.72359 * 10 5 4 12 12 C 1.50702 * 109.40466 * 317.88309 * 10 5 4 13 13 H 1.07995 * 119.99878 * 327.37407 * 12 10 5 14 14 C 1.37887 * 119.99931 * 147.37176 * 12 10 5 15 15 N 1.31516 * 119.99920 * 7.44086 * 14 12 10 16 16 Si 1.86795 * 119.99851 * 187.43827 * 14 12 10 17 17 H 1.48506 * 109.47057 * 270.00201 * 16 14 12 18 18 H 1.48501 * 109.47378 * 150.00123 * 16 14 12 19 19 H 1.48504 * 109.47254 * 29.99994 * 16 14 12 20 20 C 1.47960 * 111.00429 * 260.63654 * 2 1 3 21 21 H 1.09003 * 109.46748 * 60.00135 * 1 2 3 22 22 H 1.09000 * 109.47497 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47522 * 300.00444 * 1 2 3 24 24 H 1.09002 * 113.75456 * 108.09911 * 3 2 1 25 25 H 1.09000 * 113.75728 * 336.73458 * 3 2 1 26 26 H 1.08994 * 113.73656 * 269.25283 * 4 3 2 27 27 H 1.09002 * 109.40447 * 282.35382 * 6 5 4 28 28 H 1.09003 * 109.41209 * 42.19309 * 6 5 4 29 29 H 1.09008 * 109.63230 * 181.70808 * 7 6 5 30 30 H 1.09004 * 109.63217 * 302.29295 * 7 6 5 31 31 H 1.09002 * 109.63578 * 291.60029 * 9 8 7 32 32 H 1.09002 * 109.63102 * 171.00580 * 9 8 7 33 33 H 0.97001 * 119.99952 * 355.51607 * 15 14 12 34 34 H 1.09007 * 113.75627 * 23.26952 * 20 2 1 35 35 H 1.08994 * 113.76464 * 251.90505 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8791 -1.0359 5 7 3.2517 1.8179 -2.1421 6 6 2.0085 2.0902 -2.8671 7 6 2.1614 3.3662 -3.7019 8 16 3.4824 3.1018 -4.9241 9 6 4.8440 2.4973 -3.8804 10 6 4.3217 1.3409 -3.0210 11 1 3.9344 0.5553 -3.6698 12 6 5.4481 0.7899 -2.1851 13 1 5.6627 1.2194 -1.2178 14 6 6.2045 -0.2628 -2.6552 15 7 6.0416 -0.6905 -3.8882 16 14 7.4605 -1.0813 -1.5409 17 1 8.7712 -0.3984 -1.6869 18 1 7.6019 -2.5101 -1.9199 19 1 7.0072 -0.9859 -0.1300 20 6 1.9993 -0.2247 -1.3629 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.4460 1.6802 0.9483 25 1 1.3010 2.1198 -0.3941 26 1 3.9458 0.5067 -0.5952 27 1 1.7822 1.2516 -3.5256 28 1 1.1944 2.2207 -2.1541 29 1 1.2248 3.5820 -4.2160 30 1 2.4259 4.1999 -3.0514 31 1 5.1966 3.3024 -3.2357 32 1 5.6604 2.1452 -4.5111 33 1 5.3453 -0.3094 -4.4457 34 1 1.3011 0.0440 -2.1557 35 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260981735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:25 Heat of formation + Delta-G solvation = 27.548114 kcal Electronic energy + Delta-G solvation = -16555.869312 eV Core-core repulsion = 14101.450928 eV Total energy + Delta-G solvation = -2454.418384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48719 -38.06843 -35.12786 -32.11978 -31.72176 -29.00048 -27.12171 -26.98629 -24.23746 -24.15269 -22.24898 -20.14645 -18.80476 -17.52604 -17.32924 -16.97806 -16.25281 -15.84569 -15.64621 -15.12280 -14.74101 -14.52699 -14.21974 -13.88091 -13.69632 -13.55645 -13.41550 -12.71892 -12.62934 -12.43562 -12.33915 -12.19152 -11.93508 -11.86885 -11.52759 -10.86346 -10.72229 -10.26597 -9.83810 -9.14288 -8.69499 -8.63579 -6.35723 0.90385 1.54687 1.57446 1.66715 1.79079 2.53477 2.79276 3.13444 3.19567 3.70155 3.86492 3.93947 4.12626 4.20423 4.28298 4.30297 4.38167 4.42323 4.44289 4.53311 4.64664 4.71490 4.78808 4.84237 4.88170 4.93873 5.21083 5.30767 5.35486 5.72906 5.97951 6.07839 6.33972 6.44578 6.64911 7.42289 8.72974 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.012282 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.180228 B = 2279.146784 C = 3648.606425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.492 5.492 3 C 0.015 3.985 4 C 0.076 3.924 5 N -0.537 5.537 6 C 0.053 3.947 7 C -0.052 4.052 8 S -0.345 6.345 9 C -0.033 4.033 10 C 0.213 3.787 11 H -0.013 1.013 12 C -0.586 4.586 13 H 0.056 0.944 14 C -0.019 4.019 15 N -0.930 5.930 16 Si 1.110 2.890 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.268 1.268 20 C -0.029 4.029 21 H 0.038 0.962 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.024 0.976 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.258 0.742 34 H 0.074 0.926 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 5.100 5.824 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.215 5.215 3 C -0.113 4.113 4 C -0.034 4.034 5 N -0.260 5.260 6 C -0.076 4.076 7 C -0.200 4.200 8 S -0.118 6.118 9 C -0.182 4.182 10 C 0.104 3.896 11 H 0.005 0.995 12 C -0.626 4.626 13 H 0.074 0.926 14 C -0.220 4.220 15 N -0.567 5.567 16 Si 0.933 3.067 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.159 4.159 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.983 4.147 5.434 11.288 hybrid contribution -1.429 0.568 -0.313 1.570 sum -10.413 4.715 5.120 12.525 Atomic orbital electron populations 1.22890 0.88232 1.02788 1.01789 1.68335 1.10432 1.19172 1.23553 1.24182 0.96348 0.91022 0.99782 1.23497 0.97764 0.90193 0.91905 1.61172 1.06401 1.46400 1.12050 1.22314 0.93247 0.95539 0.96517 1.23483 0.98359 1.00514 0.97684 1.86579 1.15703 1.87391 1.22116 1.23733 0.95756 1.00886 0.97811 1.19215 0.90210 0.89617 0.90513 0.99492 1.22010 1.17411 1.18109 1.05100 0.92550 1.27084 1.01537 0.95551 0.97797 1.70900 1.31924 1.46306 1.07538 0.83005 0.74125 0.75491 0.74107 1.20144 1.21413 1.19301 1.24593 0.98636 1.01024 0.91685 0.94382 0.91048 0.89785 0.88707 0.89733 0.88032 0.95731 0.88266 0.85407 0.88691 0.90857 0.91407 0.93103 0.90797 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 2 N -0.49 -14.76 6.56 -934.62 -6.13 -20.89 16 3 C 0.02 0.45 7.41 86.41 0.64 1.09 16 4 C 0.08 2.84 3.67 46.48 0.17 3.01 16 5 N -0.54 -20.94 4.44 -855.94 -3.80 -24.73 16 6 C 0.05 1.70 3.95 86.47 0.34 2.04 16 7 C -0.05 -1.55 6.69 72.06 0.48 -1.07 16 8 S -0.34 -13.31 22.40 -56.49 -1.27 -14.57 16 9 C -0.03 -1.50 5.95 72.07 0.43 -1.07 16 10 C 0.21 10.10 1.64 44.34 0.07 10.17 16 11 H -0.01 -0.68 6.40 -2.39 -0.02 -0.70 16 12 C -0.59 -30.39 6.49 25.60 0.17 -30.23 16 13 H 0.06 2.95 7.23 -2.91 -0.02 2.92 16 14 C -0.02 -1.04 5.45 84.66 0.46 -0.58 16 15 N -0.93 -54.58 13.62 21.45 0.29 -54.29 16 16 Si 1.11 48.54 29.91 68.60 2.05 50.59 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 C -0.03 -1.00 7.23 86.40 0.62 -0.38 16 21 H 0.04 0.80 7.62 -2.39 -0.02 0.78 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.08 2.11 6.06 -2.39 -0.01 2.09 16 26 H 0.10 4.51 5.92 -2.39 -0.01 4.50 16 27 H 0.02 0.88 6.93 -2.39 -0.02 0.86 16 28 H 0.10 2.60 5.67 -2.39 -0.01 2.59 16 29 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 30 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.26 15.52 6.66 -92.71 -0.62 14.90 16 34 H 0.07 2.42 5.32 -2.38 -0.01 2.41 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -59.21 279.30 -3.00 -62.21 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.22 Total: 17.63 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 4.62 Total: -15.96 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -9.63 Total: -99.91 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.59 kcal Atomic # 16 Polarization: -13.31 SS G_CDS: -1.27 Total: -14.57 kcal Total: -59.21 -3.00 -62.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.761 kcal (2) G-P(sol) polarization free energy of solvation -59.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds