Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00213 * 2 1 4 4 C 1.53051 * 109.36643 * 183.18881 * 3 2 1 5 5 N 1.46954 * 109.36447 * 301.59615 * 4 3 2 6 6 C 1.46896 * 111.00378 * 183.18673 * 5 4 3 7 7 C 1.53046 * 113.15606 * 151.75011 * 6 5 4 8 8 S 1.81500 * 89.86348 * 211.87149 * 7 6 5 9 9 C 1.53042 * 113.14985 * 51.32002 * 6 5 4 10 10 C 1.46962 * 110.87948 * 59.32009 * 5 4 3 11 11 H 1.09002 * 109.48960 * 60.64621 * 10 5 4 12 12 C 1.50700 * 109.50690 * 180.70427 * 10 5 4 13 13 H 1.07999 * 119.99797 * 359.93886 * 12 10 5 14 14 C 1.37875 * 119.99947 * 179.97438 * 12 10 5 15 15 N 1.31511 * 120.00180 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00093 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47256 * 59.99878 * 16 14 12 18 18 H 1.48502 * 109.47538 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47382 * 299.99689 * 16 14 12 20 20 C 1.46954 * 111.00033 * 123.79726 * 2 1 3 21 21 H 1.09004 * 109.46876 * 296.20427 * 1 2 3 22 22 H 1.09003 * 109.47264 * 56.19910 * 1 2 3 23 23 H 1.08996 * 109.47140 * 176.20137 * 1 2 3 24 24 H 1.09002 * 109.48919 * 303.15443 * 3 2 1 25 25 H 1.09001 * 109.49215 * 63.20059 * 3 2 1 26 26 H 1.09001 * 109.48974 * 61.56354 * 4 3 2 27 27 H 1.09002 * 109.49266 * 181.61152 * 4 3 2 28 28 H 1.09004 * 112.49823 * 281.53882 * 6 5 4 29 29 H 1.09001 * 113.14436 * 327.11096 * 7 6 5 30 30 H 1.08998 * 113.14935 * 96.59410 * 7 6 5 31 31 H 1.09003 * 113.14871 * 263.40719 * 9 6 5 32 32 H 1.08995 * 113.14877 * 32.84585 * 9 6 5 33 33 H 0.97001 * 120.00138 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.49112 * 56.84587 * 20 2 1 35 35 H 1.09002 * 109.49324 * 296.78215 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.1208 0.4297 2.4604 8 16 7.5364 1.4425 1.9458 9 6 6.1208 1.9678 0.9400 10 6 3.5234 -0.8061 1.0598 11 1 3.8253 -1.3116 0.1425 12 6 4.0685 -1.5544 2.2490 13 1 4.7401 -1.0609 2.9359 14 6 3.7105 -2.8691 2.4595 15 7 2.8929 -3.4700 1.6229 16 14 4.3867 -3.7968 3.9330 17 1 3.9751 -3.1083 5.1829 18 1 3.8530 -5.1826 3.9331 19 1 5.8691 -3.8369 3.8551 20 6 1.9956 -0.7631 1.1401 21 1 -0.3633 0.4538 0.9221 22 1 -0.3634 0.5717 -0.8540 23 1 -0.3633 -1.0254 -0.0681 24 1 1.6013 1.9128 -0.8603 25 1 1.6935 1.8775 0.9172 26 1 3.8254 0.8478 -1.0106 27 1 3.9178 2.3448 -0.0516 28 1 5.9361 -0.1422 0.3436 29 1 5.5155 0.9014 3.2345 30 1 6.3951 -0.5949 2.7113 31 1 6.3951 2.2306 -0.0817 32 1 5.5151 2.7365 1.4199 33 1 2.6407 -4.3948 1.7712 34 1 1.6013 -1.7790 1.1111 35 1 1.6937 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = 44.840152 kcal Electronic energy + Delta-G solvation = -16537.390225 eV Core-core repulsion = 14083.721680 eV Total energy + Delta-G solvation = -2453.668545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81939 -36.16193 -33.28778 -32.20093 -29.79397 -27.00893 -26.24063 -24.97203 -22.87746 -21.71476 -20.16640 -18.86150 -17.12187 -15.69197 -15.55023 -14.66598 -14.59128 -14.24490 -13.92277 -13.73792 -13.59858 -12.72018 -12.46974 -12.19881 -11.97932 -11.87854 -11.23260 -11.15001 -11.00598 -10.87961 -10.79996 -10.52888 -10.29834 -10.06763 -9.87158 -9.51021 -8.86020 -8.55266 -7.60916 -7.44735 -7.35086 -6.11520 -4.17272 2.19611 2.42664 3.26246 3.31607 3.33797 4.31409 4.71777 4.76252 4.88225 5.23013 5.37641 5.58404 5.61310 5.72047 5.74536 5.85129 5.91200 5.95623 6.00914 6.21637 6.31686 6.32772 6.40632 6.50609 6.74879 6.84967 7.20655 7.41867 7.67478 7.81065 7.91662 7.99067 8.18234 8.46881 8.88573 9.48734 10.95100 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.013000 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.074541 B = 2153.382626 C = 3857.296935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.551 5.551 3 C 0.061 3.939 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.100 3.900 7 C -0.036 4.036 8 S -0.350 6.350 9 C -0.071 4.071 10 C 0.223 3.777 11 H 0.012 0.988 12 C -0.520 4.520 13 H 0.076 0.924 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.068 3.932 21 H 0.015 0.985 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.263 0.737 34 H 0.109 0.891 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 7.952 -2.198 8.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.067 4.067 4 C -0.071 4.071 5 N -0.253 5.253 6 C -0.010 4.010 7 C -0.184 4.184 8 S -0.125 6.125 9 C -0.219 4.219 10 C 0.117 3.883 11 H 0.029 0.971 12 C -0.559 4.559 13 H 0.094 0.906 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.059 4.059 21 H 0.034 0.966 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.044 8.010 -1.980 8.317 hybrid contribution -0.852 -0.728 0.655 1.298 sum 0.192 7.282 -1.325 7.404 Atomic orbital electron populations 1.22238 0.89013 1.01574 0.98938 1.62326 1.06424 1.12541 1.46247 1.22041 0.94698 0.90620 0.99371 1.22020 0.94460 0.97626 0.92987 1.62546 1.03904 1.18521 1.40296 1.22669 0.90102 0.92821 0.95449 1.24718 0.90430 1.01952 1.01285 1.88757 1.17258 1.53056 1.53455 1.24494 0.93772 1.01891 1.01790 1.19304 0.90371 0.81736 0.96903 0.97067 1.21365 1.28672 0.95843 1.10010 0.90639 1.24936 0.94993 0.97469 0.96382 1.69863 1.34042 1.12390 1.36252 0.86647 0.79384 0.78945 0.83049 1.20140 1.21239 1.20144 1.22493 0.97176 0.98748 0.87525 0.96621 0.92777 0.91706 0.91894 0.95028 0.94881 0.91697 0.90217 0.87530 0.87752 0.89612 0.87696 0.92695 0.87351 0.96528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.60 60.06 0.58 1.09 16 2 N -0.55 -10.88 4.97 -242.76 -1.21 -12.08 16 3 C 0.06 1.05 5.62 -3.77 -0.02 1.03 16 4 C 0.06 1.00 5.34 -3.77 -0.02 0.98 16 5 N -0.53 -10.40 4.51 -232.38 -1.05 -11.45 16 6 C 0.10 1.82 2.70 -67.67 -0.18 1.64 16 7 C -0.04 -0.66 5.44 37.18 0.20 -0.45 16 8 S -0.35 -5.95 24.80 -107.50 -2.67 -8.62 16 9 C -0.07 -1.07 6.17 37.18 0.23 -0.85 16 10 C 0.22 5.27 1.92 -68.80 -0.13 5.14 16 11 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 12 C -0.52 -13.04 7.80 -34.44 -0.27 -13.31 16 13 H 0.08 1.82 4.19 -52.49 -0.22 1.60 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -23.97 11.34 55.43 0.63 -23.35 16 16 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.07 1.56 4.66 -3.77 -0.02 1.55 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 28 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 29 H 0.11 1.93 8.10 -51.93 -0.42 1.51 16 30 H 0.10 2.04 6.92 -51.93 -0.36 1.68 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.51 7.91 -51.93 -0.41 1.10 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.11 2.79 6.12 -51.93 -0.32 2.48 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 280.75 15.07 4.23 4.23 Total: -1.00 -26.31 280.75 -10.25 -36.56 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.44 Total: 1.03 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.27 Total: -1.60 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -1.63 Total: -46.87 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.67 Total: -8.62 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.31 -10.25 -36.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.404 kcal (2) G-P(sol) polarization free energy of solvation -26.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds