Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00213 * 2 1 4 4 C 1.53051 * 109.36643 * 183.18881 * 3 2 1 5 5 N 1.46954 * 109.36447 * 301.59615 * 4 3 2 6 6 C 1.46896 * 111.00378 * 183.18673 * 5 4 3 7 7 C 1.53046 * 113.15606 * 151.75011 * 6 5 4 8 8 S 1.81500 * 89.86348 * 211.87149 * 7 6 5 9 9 C 1.53042 * 113.14985 * 51.32002 * 6 5 4 10 10 C 1.46962 * 110.87948 * 59.32009 * 5 4 3 11 11 H 1.09002 * 109.48960 * 60.64621 * 10 5 4 12 12 C 1.50700 * 109.50690 * 180.70427 * 10 5 4 13 13 H 1.07999 * 119.99797 * 359.93886 * 12 10 5 14 14 C 1.37875 * 119.99947 * 179.97438 * 12 10 5 15 15 N 1.31511 * 120.00180 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00093 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47256 * 59.99878 * 16 14 12 18 18 H 1.48502 * 109.47538 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47382 * 299.99689 * 16 14 12 20 20 C 1.46954 * 111.00033 * 123.79726 * 2 1 3 21 21 H 1.09004 * 109.46876 * 296.20427 * 1 2 3 22 22 H 1.09003 * 109.47264 * 56.19910 * 1 2 3 23 23 H 1.08996 * 109.47140 * 176.20137 * 1 2 3 24 24 H 1.09002 * 109.48919 * 303.15443 * 3 2 1 25 25 H 1.09001 * 109.49215 * 63.20059 * 3 2 1 26 26 H 1.09001 * 109.48974 * 61.56354 * 4 3 2 27 27 H 1.09002 * 109.49266 * 181.61152 * 4 3 2 28 28 H 1.09004 * 112.49823 * 281.53882 * 6 5 4 29 29 H 1.09001 * 113.14436 * 327.11096 * 7 6 5 30 30 H 1.08998 * 113.14935 * 96.59410 * 7 6 5 31 31 H 1.09003 * 113.14871 * 263.40719 * 9 6 5 32 32 H 1.08995 * 113.14877 * 32.84585 * 9 6 5 33 33 H 0.97001 * 120.00138 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.49112 * 56.84587 * 20 2 1 35 35 H 1.09002 * 109.49324 * 296.78215 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.1208 0.4297 2.4604 8 16 7.5364 1.4425 1.9458 9 6 6.1208 1.9678 0.9400 10 6 3.5234 -0.8061 1.0598 11 1 3.8253 -1.3116 0.1425 12 6 4.0685 -1.5544 2.2490 13 1 4.7401 -1.0609 2.9359 14 6 3.7105 -2.8691 2.4595 15 7 2.8929 -3.4700 1.6229 16 14 4.3867 -3.7968 3.9330 17 1 3.9751 -3.1083 5.1829 18 1 3.8530 -5.1826 3.9331 19 1 5.8691 -3.8369 3.8551 20 6 1.9956 -0.7631 1.1401 21 1 -0.3633 0.4538 0.9221 22 1 -0.3634 0.5717 -0.8540 23 1 -0.3633 -1.0254 -0.0681 24 1 1.6013 1.9128 -0.8603 25 1 1.6935 1.8775 0.9172 26 1 3.8254 0.8478 -1.0106 27 1 3.9178 2.3448 -0.0516 28 1 5.9361 -0.1422 0.3436 29 1 5.5155 0.9014 3.2345 30 1 6.3951 -0.5949 2.7113 31 1 6.3951 2.2306 -0.0817 32 1 5.5151 2.7365 1.4199 33 1 2.6407 -4.3948 1.7712 34 1 1.6013 -1.7790 1.1111 35 1 1.6937 -0.2820 2.0704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = 26.988005 kcal Electronic energy + Delta-G solvation = -16538.164352 eV Core-core repulsion = 14083.721680 eV Total energy + Delta-G solvation = -2454.442672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38186 -37.63944 -35.15068 -33.72480 -31.50766 -28.50317 -27.77236 -26.65567 -24.36724 -23.39742 -21.66111 -20.47477 -18.85070 -17.37512 -17.07246 -16.33465 -16.06825 -15.76803 -15.53164 -15.29680 -15.17686 -14.31979 -13.92978 -13.71787 -13.41277 -13.29761 -12.88081 -12.74781 -12.60518 -12.55224 -12.35168 -12.15914 -11.94880 -11.76781 -11.35033 -11.17516 -10.61339 -10.49061 -9.17599 -8.99215 -8.79898 -8.09814 -6.20658 0.87826 1.01878 1.43623 1.44540 1.50713 2.42051 3.12111 3.21975 3.38194 3.49136 4.03727 4.16455 4.22777 4.35613 4.48879 4.51559 4.53497 4.60149 4.68940 4.77677 4.83856 4.91021 4.98244 5.00979 5.07916 5.15447 5.44369 5.61162 5.74869 6.11216 6.23851 6.31246 6.49146 6.70247 6.93422 7.48657 8.96063 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.013000 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.074541 B = 2153.382626 C = 3857.296935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.567 5.567 3 C 0.061 3.939 4 C 0.055 3.945 5 N -0.526 5.526 6 C 0.094 3.906 7 C -0.038 4.038 8 S -0.351 6.351 9 C -0.049 4.049 10 C 0.231 3.769 11 H -0.033 1.033 12 C -0.527 4.527 13 H 0.083 0.917 14 C 0.018 3.982 15 N -0.916 5.916 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.084 3.916 21 H 0.020 0.980 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.032 0.968 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 10.132 -2.349 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.292 5.292 3 C -0.067 4.067 4 C -0.073 4.073 5 N -0.252 5.252 6 C -0.017 4.017 7 C -0.186 4.186 8 S -0.126 6.126 9 C -0.197 4.197 10 C 0.124 3.876 11 H -0.015 1.015 12 C -0.566 4.566 13 H 0.101 0.899 14 C -0.181 4.181 15 N -0.556 5.556 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.044 4.044 21 H 0.038 0.962 22 H 0.104 0.896 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 1.230 10.218 -2.135 10.510 hybrid contribution -0.898 -1.358 0.642 1.750 sum 0.332 8.859 -1.493 8.990 Atomic orbital electron populations 1.22287 0.87083 1.01695 1.00522 1.62262 1.08373 1.14203 1.44354 1.22178 0.94555 0.89126 1.00873 1.22205 0.94810 0.98878 0.91443 1.62500 1.04842 1.16124 1.41735 1.22660 0.89194 0.94823 0.94995 1.24587 0.91357 1.01237 1.01426 1.88789 1.17315 1.52657 1.53857 1.24421 0.92303 0.99913 1.03067 1.19013 0.90924 0.83503 0.94199 1.01536 1.21757 1.28307 0.96189 1.10388 0.89942 1.25636 0.95398 0.98487 0.98597 1.70010 1.35343 1.12390 1.37826 0.85769 0.78777 0.77653 0.80445 1.19564 1.21395 1.19806 1.22058 0.96766 0.97455 0.88137 0.96175 0.89599 0.92713 0.88493 0.94974 0.95813 0.87923 0.92260 0.87386 0.89838 0.87202 0.85869 0.93041 0.90665 0.98133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.60 127.69 1.23 2.25 16 2 N -0.57 -21.96 4.97 -921.94 -4.58 -26.54 16 3 C 0.06 1.91 5.62 86.31 0.49 2.40 16 4 C 0.05 1.75 5.34 86.31 0.46 2.21 16 5 N -0.53 -20.34 4.51 -889.12 -4.01 -24.35 16 6 C 0.09 3.32 2.70 44.95 0.12 3.45 16 7 C -0.04 -1.35 5.44 72.00 0.39 -0.96 16 8 S -0.35 -11.25 24.80 -56.49 -1.40 -12.65 16 9 C -0.05 -1.33 6.17 72.00 0.44 -0.88 16 10 C 0.23 11.17 1.92 44.17 0.08 11.26 16 11 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 12 C -0.53 -27.07 7.80 25.60 0.20 -26.87 16 13 H 0.08 4.03 4.19 -2.91 -0.01 4.02 16 14 C 0.02 0.97 5.30 84.65 0.45 1.42 16 15 N -0.92 -51.33 11.34 21.45 0.24 -51.09 16 16 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C 0.08 3.97 4.66 86.31 0.40 4.37 16 21 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 22 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.10 2.43 8.13 -2.39 -0.02 2.41 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 2.52 6.80 -2.39 -0.02 2.50 16 28 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 29 H 0.11 3.80 8.10 -2.39 -0.02 3.78 16 30 H 0.08 3.29 6.92 -2.39 -0.02 3.28 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.12 2.99 7.91 -2.39 -0.02 2.98 16 33 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.08 4.05 6.12 -2.38 -0.01 4.03 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -58.07 280.75 -2.40 -60.46 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.06 Total: 11.17 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.26 Total: -1.35 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -8.35 Total: -101.98 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -1.40 Total: -12.65 kcal Total: -58.07 -2.40 -60.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.451 kcal (2) G-P(sol) polarization free energy of solvation -58.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds