Wall clock time and date at job start Mon Mar 30 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46480 * 2 1 4 4 C 1.50695 * 109.46915 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99518 * 114.37604 * 4 2 1 6 6 C 1.37878 * 120.00439 * 294.37065 * 4 2 1 7 7 N 1.31507 * 120.00312 * 157.15203 * 6 4 2 8 8 Si 1.86801 * 119.99463 * 337.15149 * 6 4 2 9 9 H 1.48510 * 109.46809 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47606 * 299.99845 * 8 6 4 11 11 H 1.48502 * 109.47343 * 60.00150 * 8 6 4 12 12 N 1.46501 * 109.47192 * 239.99963 * 2 1 3 13 13 C 1.46497 * 119.99845 * 299.99851 * 12 2 1 14 14 C 1.34781 * 119.99796 * 119.99654 * 12 2 1 15 15 O 1.21277 * 119.99763 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99576 * 179.97438 * 14 12 2 17 17 H 1.08998 * 110.50563 * 38.71718 * 16 14 12 18 18 C 1.54091 * 110.56982 * 275.81140 * 16 14 12 19 19 O 1.45698 * 104.01044 * 241.43371 * 18 16 14 20 20 C 1.33764 * 109.47712 * 359.97438 * 19 18 16 21 21 O 1.21513 * 123.07421 * 180.02562 * 20 19 18 22 22 N 1.34010 * 113.86015 * 0.02562 * 20 19 18 23 23 H 1.08994 * 109.47265 * 293.29041 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.29792 * 1 2 3 25 25 H 1.09001 * 109.47164 * 173.29069 * 1 2 3 26 26 H 0.96999 * 120.00037 * 354.92872 * 7 6 4 27 27 H 1.09005 * 109.47196 * 90.00309 * 13 12 2 28 28 H 1.09001 * 109.46912 * 209.99651 * 13 12 2 29 29 H 1.08993 * 109.47341 * 329.99860 * 13 12 2 30 30 H 1.09000 * 110.51764 * 0.06478 * 18 16 14 31 31 H 1.08996 * 110.52001 * 122.79485 * 18 16 14 32 32 H 0.96995 * 125.55950 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8129 -0.9519 3.5407 8 14 1.4577 1.6521 2.6639 9 1 1.2389 1.9726 4.0974 10 1 2.6187 2.4254 2.1550 11 1 0.2446 2.0110 1.8862 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0355 -2.0834 15 8 3.0864 1.1254 -1.8912 16 6 3.2960 -0.7461 -3.3135 17 1 2.5267 -1.4060 -3.7145 18 6 4.5797 -1.5369 -2.9952 19 8 5.5877 -0.9350 -3.8580 20 6 5.0311 0.0458 -4.5773 21 8 5.6521 0.7139 -5.3802 22 7 3.7259 0.2245 -4.3317 23 1 -0.3633 0.4063 0.9439 24 1 -0.3633 0.6142 -0.8239 25 1 -0.3633 -1.0206 -0.1201 26 1 1.9161 -1.9110 3.4386 27 1 0.7376 -2.1444 -1.9993 28 1 2.4629 -2.5818 -1.9863 29 1 1.5296 -2.5968 -0.4708 30 1 4.8526 -1.4163 -1.9469 31 1 4.4489 -2.5914 -3.2381 32 1 3.1574 0.8861 -4.7560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283105248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:02 Heat of formation + Delta-G solvation = -98.078786 kcal Electronic energy + Delta-G solvation = -18051.699583 eV Core-core repulsion = 15013.247642 eV Total energy + Delta-G solvation = -3038.451941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80297 -39.27857 -37.12741 -35.84439 -34.66023 -33.04757 -30.89582 -29.25237 -26.57187 -25.12180 -24.52144 -22.42874 -21.31250 -18.96151 -18.25499 -17.78330 -17.40446 -16.78004 -16.19347 -15.40232 -14.92004 -14.57053 -14.30699 -13.93164 -13.59477 -13.22223 -13.21060 -12.81080 -12.29841 -12.07352 -11.93739 -11.68289 -11.43413 -10.91225 -10.74568 -10.61792 -10.28425 -10.05643 -9.89277 -9.29600 -9.07083 -8.45630 -8.03817 -6.63758 -4.27664 2.49363 2.67405 2.74838 3.21751 3.31479 3.42214 3.55049 3.65545 4.03267 4.37246 4.45243 4.53480 4.93598 5.02702 5.07739 5.28298 5.38046 5.65685 6.04853 6.18079 6.26846 6.43082 6.66612 6.77101 6.93173 7.13750 7.20175 7.64058 7.99178 8.04390 8.18383 8.44672 8.71702 9.37898 10.72016 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.006660 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.867268 B = 4203.491316 C = 4344.483775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.622 4.622 5 H 0.064 0.936 6 C 0.046 3.954 7 N -0.889 5.889 8 Si 1.030 2.970 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.579 5.579 13 C 0.077 3.923 14 C 0.492 3.508 15 O -0.532 6.532 16 C 0.075 3.925 17 H 0.122 0.878 18 C 0.055 3.945 19 O -0.324 6.324 20 C 0.652 3.348 21 O -0.525 6.525 22 N -0.709 5.709 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.271 0.729 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -4.555 -11.871 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.660 4.660 5 H 0.082 0.918 6 C -0.162 4.162 7 N -0.521 5.521 8 Si 0.857 3.143 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.310 5.310 13 C -0.066 4.066 14 C 0.276 3.724 15 O -0.409 6.409 16 C -0.035 4.035 17 H 0.140 0.860 18 C -0.020 4.020 19 O -0.234 6.234 20 C 0.405 3.595 21 O -0.410 6.410 22 N -0.381 5.381 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -1.451 -2.628 -10.939 11.343 hybrid contribution -0.275 -1.150 -1.112 1.623 sum -1.727 -3.777 -12.051 12.746 Atomic orbital electron populations 1.22427 0.98360 1.00256 1.00341 1.19257 0.90567 0.94723 0.82051 0.92710 1.22054 1.41874 1.11280 0.90784 0.91830 1.25611 0.93103 1.05694 0.91793 1.70870 1.43029 1.06467 1.31759 0.84239 0.77688 0.76007 0.76396 1.20773 1.20459 1.20175 1.48034 1.48284 1.11861 1.22850 1.21745 0.99021 0.82640 1.03239 1.20335 0.80319 0.87565 0.84221 1.90722 1.57496 1.16680 1.75966 1.22416 0.99200 0.91772 0.90157 0.86030 1.24272 0.83062 0.97969 0.96722 1.87267 1.36084 1.47355 1.52696 1.18411 0.81342 0.79549 0.80221 1.91064 1.65541 1.48030 1.36411 1.45647 1.10415 1.39442 1.42619 0.91769 0.95531 0.93358 0.91952 0.93113 0.92733 0.89238 0.86787 0.86455 0.71816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.02 37.16 0.34 -2.75 16 2 C 0.24 5.20 2.23 -69.08 -0.15 5.05 16 3 H 0.06 1.36 5.48 -51.93 -0.28 1.07 16 4 C -0.62 -15.80 8.30 -34.44 -0.29 -16.09 16 5 H 0.06 1.69 7.38 -52.48 -0.39 1.30 16 6 C 0.05 1.23 5.20 -17.82 -0.09 1.14 16 7 N -0.89 -25.36 13.70 55.43 0.76 -24.60 16 8 Si 1.03 24.24 26.43 -169.99 -4.49 19.74 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -5.98 6.12 56.52 0.35 -5.64 16 12 N -0.58 -10.26 2.75 -175.27 -0.48 -10.74 16 13 C 0.08 1.00 8.78 59.85 0.53 1.52 16 14 C 0.49 8.48 6.78 -10.99 -0.07 8.40 16 15 O -0.53 -11.62 15.93 5.56 0.09 -11.53 16 16 C 0.07 0.90 3.17 -68.19 -0.22 0.68 16 17 H 0.12 0.98 7.19 -51.93 -0.37 0.61 16 18 C 0.06 0.61 7.00 37.73 0.26 0.88 16 19 O -0.32 -4.77 11.09 -37.81 -0.42 -5.19 16 20 C 0.65 10.45 9.16 53.71 0.49 10.95 16 21 O -0.53 -10.14 18.04 -19.12 -0.34 -10.49 16 22 N -0.71 -9.37 5.66 -59.36 -0.34 -9.70 16 23 H 0.06 1.35 5.44 -51.93 -0.28 1.07 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.88 7.45 -51.93 -0.39 0.49 16 26 H 0.27 7.58 8.73 -40.82 -0.36 7.23 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.50 5.95 -51.93 -0.31 0.19 16 29 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 30 H 0.11 1.39 7.72 -51.93 -0.40 0.99 16 31 H 0.12 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.44 5.10 8.96 -40.82 -0.37 4.73 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -33.55 269.19 -4.00 -37.55 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.62 Total: 1.12 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.79 Total: 9.78 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.06 Total: -45.05 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.68 Total: -27.20 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.49 Total: 19.74 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.55 -4.00 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283105248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.528 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds