Wall clock time and date at job start Mon Mar 30 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46480 * 2 1 4 4 C 1.50695 * 109.46915 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99518 * 114.37604 * 4 2 1 6 6 C 1.37878 * 120.00439 * 294.37065 * 4 2 1 7 7 N 1.31507 * 120.00312 * 157.15203 * 6 4 2 8 8 Si 1.86801 * 119.99463 * 337.15149 * 6 4 2 9 9 H 1.48510 * 109.46809 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47606 * 299.99845 * 8 6 4 11 11 H 1.48502 * 109.47343 * 60.00150 * 8 6 4 12 12 N 1.46501 * 109.47192 * 239.99963 * 2 1 3 13 13 C 1.46497 * 119.99845 * 299.99851 * 12 2 1 14 14 C 1.34781 * 119.99796 * 119.99654 * 12 2 1 15 15 O 1.21277 * 119.99763 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99576 * 179.97438 * 14 12 2 17 17 H 1.08998 * 110.50563 * 38.71718 * 16 14 12 18 18 C 1.54091 * 110.56982 * 275.81140 * 16 14 12 19 19 O 1.45698 * 104.01044 * 241.43371 * 18 16 14 20 20 C 1.33764 * 109.47712 * 359.97438 * 19 18 16 21 21 O 1.21513 * 123.07421 * 180.02562 * 20 19 18 22 22 N 1.34010 * 113.86015 * 0.02562 * 20 19 18 23 23 H 1.08994 * 109.47265 * 293.29041 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.29792 * 1 2 3 25 25 H 1.09001 * 109.47164 * 173.29069 * 1 2 3 26 26 H 0.96999 * 120.00037 * 354.92872 * 7 6 4 27 27 H 1.09005 * 109.47196 * 90.00309 * 13 12 2 28 28 H 1.09001 * 109.46912 * 209.99651 * 13 12 2 29 29 H 1.08993 * 109.47341 * 329.99860 * 13 12 2 30 30 H 1.09000 * 110.51764 * 0.06478 * 18 16 14 31 31 H 1.08996 * 110.52001 * 122.79485 * 18 16 14 32 32 H 0.96995 * 125.55950 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8129 -0.9519 3.5407 8 14 1.4577 1.6521 2.6639 9 1 1.2389 1.9726 4.0974 10 1 2.6187 2.4254 2.1550 11 1 0.2446 2.0110 1.8862 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0355 -2.0834 15 8 3.0864 1.1254 -1.8912 16 6 3.2960 -0.7461 -3.3135 17 1 2.5267 -1.4060 -3.7145 18 6 4.5797 -1.5369 -2.9952 19 8 5.5877 -0.9350 -3.8580 20 6 5.0311 0.0458 -4.5773 21 8 5.6521 0.7139 -5.3802 22 7 3.7259 0.2245 -4.3317 23 1 -0.3633 0.4063 0.9439 24 1 -0.3633 0.6142 -0.8239 25 1 -0.3633 -1.0206 -0.1201 26 1 1.9161 -1.9110 3.4386 27 1 0.7376 -2.1444 -1.9993 28 1 2.4629 -2.5818 -1.9863 29 1 1.5296 -2.5968 -0.4708 30 1 4.8526 -1.4163 -1.9469 31 1 4.4489 -2.5914 -3.2381 32 1 3.1574 0.8861 -4.7560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283105248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:02 Heat of formation + Delta-G solvation = -126.098309 kcal Electronic energy + Delta-G solvation = -18052.914601 eV Core-core repulsion = 15013.247642 eV Total energy + Delta-G solvation = -3039.666959 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.92952 -40.66372 -38.39848 -37.36534 -35.81399 -34.88517 -32.47652 -30.44247 -27.74036 -26.85395 -25.78616 -23.57265 -22.83750 -20.44768 -19.56795 -19.30962 -18.73287 -18.00257 -17.56332 -16.73722 -16.29121 -15.93560 -15.46643 -15.34332 -14.94642 -14.77431 -14.55260 -14.17294 -13.73452 -13.54888 -13.27543 -13.16457 -12.94787 -12.44364 -12.07586 -11.99659 -11.91127 -11.73491 -11.41838 -11.22254 -10.46049 -10.30974 -9.56500 -8.71116 -6.36651 1.31825 1.41857 1.42397 1.49913 1.62192 1.67438 2.04391 2.42108 2.55736 2.98314 3.05019 3.30200 3.71201 3.96319 4.27520 4.36543 4.46036 4.53307 4.65611 4.72426 4.82031 5.01237 5.16495 5.36319 5.62324 5.63931 5.80900 6.02901 6.06816 6.54970 6.61853 6.86745 7.13708 7.35013 8.61380 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.006660 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.867268 B = 4203.491316 C = 4344.483775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.233 3.767 3 H 0.027 0.973 4 C -0.611 4.611 5 H 0.044 0.956 6 C 0.002 3.998 7 N -0.924 5.924 8 Si 1.059 2.941 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.246 1.246 12 N -0.584 5.584 13 C 0.069 3.931 14 C 0.486 3.514 15 O -0.588 6.588 16 C 0.088 3.912 17 H 0.180 0.820 18 C 0.051 3.949 19 O -0.336 6.336 20 C 0.650 3.350 21 O -0.568 6.568 22 N -0.699 5.699 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.261 0.739 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -5.809 -13.769 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.649 4.649 5 H 0.062 0.938 6 C -0.200 4.200 7 N -0.558 5.558 8 Si 0.883 3.117 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.170 1.170 12 N -0.314 5.314 13 C -0.073 4.073 14 C 0.272 3.728 15 O -0.468 6.468 16 C -0.021 4.021 17 H 0.197 0.803 18 C -0.023 4.023 19 O -0.246 6.246 20 C 0.402 3.598 21 O -0.457 6.457 22 N -0.370 5.370 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.193 0.807 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.686 -3.932 -12.851 13.705 hybrid contribution 0.134 -0.837 -0.512 0.990 sum -2.552 -4.769 -13.363 14.416 Atomic orbital electron populations 1.22257 0.96226 1.01686 1.00379 1.18947 0.92083 0.93241 0.82748 0.95543 1.22246 1.40203 1.10237 0.92195 0.93786 1.26544 0.93270 1.08078 0.92156 1.70952 1.46120 1.06085 1.32677 0.83836 0.78534 0.72779 0.76557 1.20983 1.21302 1.17016 1.48017 1.48194 1.13681 1.21547 1.22069 1.02408 0.79705 1.03127 1.21229 0.79098 0.87114 0.85338 1.90704 1.59266 1.19410 1.77456 1.22623 1.00904 0.91299 0.87294 0.80309 1.24698 0.81455 1.00490 0.95636 1.87247 1.37430 1.47092 1.52822 1.18537 0.81805 0.79445 0.79964 1.91025 1.66586 1.49632 1.38416 1.45650 1.09548 1.39687 1.42141 0.93334 0.93408 0.91710 0.92928 0.89810 0.88234 0.91769 0.88302 0.80682 0.71055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.02 71.98 0.65 -4.85 16 2 C 0.23 10.04 2.23 44.24 0.10 10.13 16 3 H 0.03 1.31 5.48 -2.39 -0.01 1.30 16 4 C -0.61 -31.08 8.30 25.60 0.21 -30.87 16 5 H 0.04 2.37 7.38 -2.91 -0.02 2.34 16 6 C 0.00 0.09 5.20 84.66 0.44 0.53 16 7 N -0.92 -53.71 13.70 21.45 0.29 -53.42 16 8 Si 1.06 49.26 26.43 68.60 1.81 51.07 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.25 -10.16 6.12 99.48 0.61 -9.56 16 12 N -0.58 -19.17 2.75 -826.81 -2.28 -21.45 16 13 C 0.07 1.48 8.78 127.77 1.12 2.60 16 14 C 0.49 15.58 6.78 87.65 0.59 16.17 16 15 O -0.59 -25.37 15.93 -3.02 -0.05 -25.42 16 16 C 0.09 1.73 3.17 44.50 0.14 1.87 16 17 H 0.18 1.60 7.19 -2.39 -0.02 1.58 16 18 C 0.05 0.93 7.00 72.35 0.51 1.44 16 19 O -0.34 -9.11 11.09 -47.25 -0.52 -9.63 16 20 C 0.65 19.79 9.16 129.91 1.19 20.98 16 21 O -0.57 -21.77 18.04 19.64 0.35 -21.41 16 22 N -0.70 -16.61 5.66 -573.41 -3.24 -19.86 16 23 H 0.05 1.95 5.44 -2.39 -0.01 1.94 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 2.17 7.45 -2.39 -0.02 2.15 16 26 H 0.26 15.08 8.73 -92.71 -0.81 14.27 16 27 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.10 1.22 5.95 -2.39 -0.01 1.20 16 29 H 0.06 1.76 6.92 -2.39 -0.02 1.74 16 30 H 0.10 2.15 7.72 -2.39 -0.02 2.13 16 31 H 0.18 1.19 8.11 -2.39 -0.02 1.17 16 32 H 0.44 9.36 8.96 -92.71 -0.83 8.53 16 Total: -1.00 -77.33 269.19 1.52 -75.81 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.19 Total: 6.29 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 4.95 Total: 18.01 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -5.23 Total: -94.72 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.22 Total: -56.47 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.81 Total: 51.07 kcal Total: -77.33 1.52 -75.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283105248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.284 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds