Wall clock time and date at job start Mon Mar 30 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46854 * 2 1 4 4 C 1.50696 * 109.46992 * 119.99977 * 2 1 3 5 5 H 1.07997 * 119.99945 * 120.00536 * 4 2 1 6 6 C 1.37882 * 119.99864 * 300.00000 * 4 2 1 7 7 N 1.31507 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99773 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47221 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47103 * 119.99833 * 8 6 4 11 11 H 1.48501 * 109.47090 * 240.00172 * 8 6 4 12 12 N 1.46498 * 109.47385 * 240.00345 * 2 1 3 13 13 C 1.46501 * 119.99409 * 299.99785 * 12 2 1 14 14 C 1.34770 * 120.00145 * 119.99748 * 12 2 1 15 15 O 1.21285 * 120.00096 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00040 * 180.02562 * 14 12 2 17 17 H 1.09001 * 110.62193 * 317.17683 * 16 14 12 18 18 C 1.54091 * 110.56511 * 79.99917 * 16 14 12 19 19 O 1.45701 * 104.12999 * 118.64505 * 18 16 14 20 20 C 1.33775 * 109.48063 * 359.93023 * 19 18 16 21 21 O 1.21507 * 123.07366 * 180.02562 * 20 19 18 22 22 N 1.34005 * 113.85297 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47437 * 300.00047 * 1 2 3 25 25 H 1.09001 * 109.47365 * 59.99812 * 1 2 3 26 26 H 0.96998 * 120.00274 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47101 * 269.99375 * 13 12 2 28 28 H 1.08997 * 109.47651 * 30.00424 * 13 12 2 29 29 H 1.09008 * 109.46528 * 150.00438 * 13 12 2 30 30 H 1.09002 * 110.52223 * 359.94293 * 18 16 14 31 31 H 1.09002 * 110.52259 * 237.34330 * 18 16 14 32 32 H 0.97003 * 125.55928 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2856 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7931 -0.0355 -2.0833 15 8 3.0865 1.1256 -1.8911 16 6 3.2951 -0.7457 -3.3140 17 1 3.6363 -1.7505 -3.0651 18 6 2.1971 -0.7989 -4.3939 19 8 2.7656 -0.0635 -5.5158 20 6 3.9897 0.3681 -5.1919 21 8 4.6882 1.0114 -5.9501 22 7 4.3752 0.0263 -3.9549 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7088 1.1614 3.4844 27 1 2.4158 -2.7376 -0.9717 28 1 0.6904 -2.3002 -0.9847 29 1 1.6239 -2.2851 -2.5002 30 1 1.2884 -0.3124 -4.0392 31 1 1.9907 -1.8307 -4.6785 32 1 5.2265 0.2501 -3.5472 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283105252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:05 Heat of formation + Delta-G solvation = -124.557946 kcal Electronic energy + Delta-G solvation = -17968.405329 eV Core-core repulsion = 14928.805165 eV Total energy + Delta-G solvation = -3039.600164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.86726 -40.56131 -38.35651 -37.25892 -35.73927 -34.82362 -31.98091 -30.20041 -27.66717 -27.27449 -25.73154 -23.51797 -22.96300 -20.39196 -19.27327 -18.72249 -18.47929 -17.83880 -17.50344 -16.82979 -16.37932 -15.95599 -15.54374 -15.27821 -14.81617 -14.65470 -14.28116 -14.16935 -13.46272 -13.35617 -12.99238 -12.90640 -12.67278 -12.60576 -12.16969 -12.10967 -12.03203 -11.88880 -11.36277 -11.14431 -10.55301 -10.23171 -9.38351 -8.14629 -6.30950 1.35606 1.42016 1.45091 1.52051 1.55343 1.64453 2.12777 2.42070 2.61424 3.10183 3.14760 3.39259 3.77266 4.02673 4.34270 4.43447 4.53735 4.72680 4.84328 4.91329 5.06013 5.13744 5.47181 5.59668 5.63424 5.66868 6.01940 6.07847 6.16048 6.71923 6.77828 6.89618 7.23399 7.43019 8.89768 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.005884 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.895470 B = 4757.277476 C = 4855.565961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.534 4.534 5 H 0.067 0.933 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.261 1.261 10 H -0.291 1.291 11 H -0.277 1.277 12 N -0.588 5.588 13 C 0.070 3.930 14 C 0.484 3.516 15 O -0.594 6.594 16 C 0.086 3.914 17 H 0.175 0.825 18 C 0.053 3.947 19 O -0.334 6.334 20 C 0.650 3.350 21 O -0.571 6.571 22 N -0.703 5.703 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.179 0.821 32 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -11.776 -9.318 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.024 0.976 4 C -0.572 4.572 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.185 1.185 10 H -0.217 1.217 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.072 4.072 14 C 0.270 3.730 15 O -0.475 6.475 16 C -0.023 4.023 17 H 0.192 0.808 18 C -0.022 4.022 19 O -0.244 6.244 20 C 0.403 3.597 21 O -0.459 6.459 22 N -0.374 5.374 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.196 0.804 32 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.187 -10.782 -9.746 14.535 hybrid contribution 0.603 0.419 1.656 1.812 sum 0.790 -10.363 -8.090 13.171 Atomic orbital electron populations 1.21889 0.96850 1.00548 1.00019 1.18572 0.91815 0.92168 0.81673 0.97572 1.21614 1.31714 1.13047 0.90864 0.91512 1.25729 0.95151 0.95600 1.02119 1.70028 1.37501 1.23999 1.24320 0.85432 0.78144 0.78522 0.79044 1.18488 1.21714 1.20234 1.48220 1.48132 1.13739 1.21715 1.22070 1.02544 0.79622 1.02961 1.21238 0.79409 0.86913 0.85445 1.90711 1.59574 1.19477 1.77712 1.22698 0.89398 0.98478 0.91758 0.80818 1.24775 0.95086 1.01709 0.80586 1.87241 1.28390 1.68261 1.40493 1.18495 0.80876 0.77995 0.82302 1.91021 1.55276 1.44078 1.55532 1.45778 1.20110 1.57839 1.13669 0.92651 0.91817 0.95839 0.92766 0.91571 0.90528 0.87686 0.87302 0.80409 0.71405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.95 71.98 0.64 -5.23 16 2 C 0.26 12.28 2.63 44.24 0.12 12.39 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.35 16 4 C -0.53 -26.70 8.37 25.60 0.21 -26.48 16 5 H 0.07 3.18 7.65 -2.91 -0.02 3.15 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -51.12 11.32 21.45 0.24 -50.88 16 8 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 N -0.59 -20.36 2.75 -826.81 -2.28 -22.63 16 13 C 0.07 1.50 9.21 127.77 1.18 2.68 16 14 C 0.48 16.58 6.80 87.66 0.60 17.18 16 15 O -0.59 -27.72 15.89 -3.04 -0.05 -27.77 16 16 C 0.09 1.79 3.20 44.44 0.14 1.94 16 17 H 0.17 1.97 7.43 -2.39 -0.02 1.96 16 18 C 0.05 0.85 6.71 72.35 0.49 1.33 16 19 O -0.33 -8.67 11.09 -47.35 -0.53 -9.19 16 20 C 0.65 20.16 9.16 129.91 1.19 21.35 16 21 O -0.57 -22.28 18.04 19.66 0.35 -21.93 16 22 N -0.70 -18.18 5.65 -572.73 -3.23 -21.41 16 23 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 24 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.77 6.43 -2.39 -0.02 1.75 16 29 H 0.10 1.09 5.66 -2.38 -0.01 1.08 16 30 H 0.11 1.87 7.72 -2.39 -0.02 1.85 16 31 H 0.18 0.79 8.00 -2.39 -0.02 0.77 16 32 H 0.44 10.86 8.96 -92.71 -0.83 10.03 16 Total: -1.00 -77.21 272.00 1.88 -75.33 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.33 Total: 9.27 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 5.01 Total: 26.30 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -5.27 Total: -94.92 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.22 Total: -58.89 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -77.21 1.88 -75.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283105252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.231 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds