Wall clock time and date at job start Mon Mar 30 2020 03:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47118 * 2 1 4 4 N 1.46494 * 109.47150 * 119.99718 * 2 1 3 5 5 C 1.46497 * 120.00158 * 300.00292 * 4 2 1 6 6 C 1.50704 * 109.47299 * 269.99789 * 5 4 2 7 7 H 1.07997 * 119.99486 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00195 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99716 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00120 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47273 * 89.99471 * 10 8 6 12 12 H 1.48498 * 109.47227 * 209.99875 * 10 8 6 13 13 H 1.48506 * 109.46996 * 329.99888 * 10 8 6 14 14 C 1.38268 * 120.00058 * 120.00199 * 4 2 1 15 15 N 1.31630 * 127.43890 * 180.02562 * 14 4 2 16 16 C 1.31704 * 116.76632 * 180.02562 * 15 14 4 17 17 N 1.39427 * 121.17169 * 180.02562 * 16 15 14 18 18 N 1.30637 * 117.65657 * 0.02562 * 16 15 14 19 19 S 1.69928 * 105.78559 * 359.97438 * 18 16 15 20 20 H 1.08992 * 109.47053 * 300.00378 * 1 2 3 21 21 H 1.09000 * 109.46819 * 60.00114 * 1 2 3 22 22 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47215 * 240.00435 * 2 1 3 24 24 H 1.08989 * 109.47263 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46730 * 299.99947 * 3 2 1 26 26 H 1.09002 * 109.46986 * 59.99656 * 3 2 1 27 27 H 1.08997 * 109.47187 * 29.99998 * 5 4 2 28 28 H 1.09005 * 109.47218 * 149.99718 * 5 4 2 29 29 H 0.97007 * 119.99651 * 180.02562 * 9 8 6 30 30 H 0.97009 * 120.00080 * 180.02562 * 17 16 15 31 31 H 0.96994 * 119.99989 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8020 2.9830 7 1 3.5427 1.0364 2.3454 8 6 2.5816 1.4101 4.2144 9 7 1.5589 1.1249 4.9906 10 14 3.8687 2.6402 4.7797 11 1 3.4749 4.0042 4.3442 12 1 3.9715 2.6038 6.2606 13 1 5.1831 2.2905 4.1835 14 6 2.8133 -1.8147 1.0694 15 7 3.3283 -2.5438 2.0367 16 6 4.0601 -3.5775 1.6751 17 7 4.6491 -4.4120 2.6241 18 7 4.2146 -3.7933 0.3960 19 16 3.3443 -2.5627 -0.3888 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.6904 0.2974 2.4843 28 1 1.6237 -1.0226 3.2291 29 1 1.4732 1.5531 5.8568 30 1 5.1851 -5.1685 2.3388 31 1 4.5228 -4.2362 3.5696 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308482008.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:12 Heat of formation + Delta-G solvation = 40.955620 kcal Electronic energy + Delta-G solvation = -15610.875086 eV Core-core repulsion = 13053.497752 eV Total energy + Delta-G solvation = -2557.377335 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97245 -39.08531 -34.92166 -34.89497 -32.89438 -31.50197 -29.46333 -28.04413 -25.68513 -24.47942 -21.66537 -20.79546 -19.70192 -18.59356 -18.27643 -16.96541 -16.60836 -16.42433 -16.39514 -15.62051 -14.93938 -14.85948 -14.14354 -13.40439 -13.29364 -13.04527 -12.95103 -12.84419 -12.67949 -12.51685 -12.33738 -12.06512 -11.94813 -11.66950 -11.49371 -11.05621 -10.59258 -10.31649 -9.52684 -8.61451 -8.14302 -6.29840 0.06711 0.18825 0.96514 1.38040 1.40512 1.49556 1.79209 2.14477 2.39699 2.89942 3.12329 3.83645 4.16301 4.25119 4.29483 4.63836 4.84163 4.86541 4.96672 4.99983 5.08978 5.17825 5.39894 5.52040 5.66220 5.87909 6.07226 6.11695 6.29206 6.50868 6.78107 7.36380 7.40789 8.87733 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.009392 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.298071 B = 2980.570691 C = 3832.301181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 C -0.152 4.152 4 N -0.529 5.529 5 C 0.271 3.729 6 C -0.524 4.524 7 H 0.051 0.949 8 C 0.017 3.983 9 N -0.924 5.924 10 Si 0.955 3.045 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.278 1.278 14 C 0.369 3.631 15 N -0.646 5.646 16 C 0.544 3.456 17 N -0.808 5.808 18 N -0.603 5.603 19 S 0.165 5.835 20 H 0.051 0.949 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.010 0.990 29 H 0.265 0.735 30 H 0.423 0.577 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -3.193 -9.581 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 C -0.210 4.210 4 N -0.242 5.242 5 C 0.149 3.851 6 C -0.563 4.563 7 H 0.069 0.931 8 C -0.182 4.182 9 N -0.563 5.563 10 Si 0.781 3.219 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.203 1.203 14 C -0.010 4.010 15 N -0.389 5.389 16 C 0.168 3.832 17 N -0.365 5.365 18 N -0.451 5.451 19 S 0.292 5.708 20 H 0.071 0.929 21 H 0.123 0.877 22 H 0.076 0.924 23 H 0.116 0.884 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.317 -3.469 -10.424 10.991 hybrid contribution 0.721 0.445 2.200 2.358 sum 1.038 -3.024 -8.224 8.824 Atomic orbital electron populations 1.22152 0.92638 1.02721 1.03860 1.21586 0.96176 0.94171 0.84867 1.22116 1.00823 0.94588 1.03460 1.47063 1.45791 1.21603 1.09763 1.18995 0.95627 0.93418 0.77077 1.21537 1.08879 1.23649 1.02202 0.93052 1.25622 0.97491 0.98727 0.96410 1.70026 1.30946 1.44251 1.11123 0.85597 0.79330 0.79649 0.77312 1.19235 1.20967 1.20285 1.25136 0.90678 0.90834 0.94348 1.66902 1.25099 1.12326 1.34583 1.19922 0.88962 0.87343 0.86951 1.41398 1.57588 1.31277 1.06221 1.77206 1.36392 1.25522 1.06008 1.84050 1.50026 1.22324 1.14380 0.92947 0.87659 0.92402 0.88401 0.93771 0.88329 0.92515 0.94469 0.97220 0.92557 0.74429 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.17 71.98 0.66 -3.38 16 2 C 0.13 4.11 3.31 45.00 0.15 4.26 16 3 C -0.15 -4.55 8.47 71.98 0.61 -3.94 16 4 N -0.53 -21.50 2.48 -688.49 -1.71 -23.21 16 5 C 0.27 13.36 4.76 85.63 0.41 13.76 16 6 C -0.52 -27.82 7.83 25.60 0.20 -27.62 16 7 H 0.05 2.77 7.63 -2.91 -0.02 2.75 16 8 C 0.02 0.92 5.46 84.65 0.46 1.38 16 9 N -0.92 -52.55 13.29 21.45 0.28 -52.26 16 10 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.37 15.39 7.94 178.87 1.42 16.81 16 15 N -0.65 -28.90 10.12 -208.93 -2.11 -31.01 16 16 C 0.54 21.35 8.74 262.14 2.29 23.64 16 17 N -0.81 -23.98 9.12 -67.50 -0.62 -24.60 16 18 N -0.60 -23.21 12.22 -67.70 -0.83 -24.04 16 19 S 0.16 5.80 22.27 -56.49 -1.26 4.54 16 20 H 0.05 1.58 6.66 -2.39 -0.02 1.56 16 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 2.59 6.57 -2.39 -0.02 2.58 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 2.03 6.92 -2.39 -0.02 2.02 16 27 H 0.04 1.86 6.43 -2.39 -0.02 1.85 16 28 H 0.01 0.55 7.72 -2.38 -0.02 0.53 16 29 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.42 9.90 8.96 -92.70 -0.83 9.07 16 31 H 0.42 11.50 8.96 -92.71 -0.83 10.67 16 Total: -1.00 -65.11 276.76 1.50 -63.62 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.49 Total: 16.82 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 6.20 Total: 24.91 kcal Atomic # 7 Polarization: -150.13 SS G_CDS: -4.98 Total: -155.11 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.26 Total: 4.54 kcal Total: -65.11 1.50 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308482008.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.573 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds