Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46784 * 2 1 4 4 C 1.50701 * 109.47203 * 240.00332 * 2 1 3 5 5 H 1.08001 * 119.99955 * 274.99864 * 4 2 1 6 6 C 1.37871 * 119.99880 * 94.99212 * 4 2 1 7 7 N 1.31521 * 119.99920 * 184.91357 * 6 4 2 8 8 Si 1.86801 * 120.00156 * 4.92048 * 6 4 2 9 9 H 1.48496 * 109.47351 * 84.82720 * 8 6 4 10 10 H 1.48507 * 109.46942 * 204.82851 * 8 6 4 11 11 H 1.48500 * 109.46855 * 324.82632 * 8 6 4 12 12 N 1.46893 * 109.47051 * 120.00432 * 2 1 3 13 13 C 1.46904 * 111.00179 * 274.99980 * 12 2 1 14 14 C 1.50699 * 109.47459 * 180.02562 * 13 12 2 15 15 N 1.30290 * 126.34461 * 89.97528 * 14 13 12 16 16 N 1.28521 * 110.08385 * 180.02562 * 15 14 13 17 17 C 1.31284 * 109.85205 * 359.97438 * 16 15 14 18 18 S 1.76208 * 126.48260 * 179.97438 * 17 16 15 19 19 N 1.36537 * 107.03422 * 0.26875 * 17 16 15 20 20 C 1.46497 * 127.14458 * 179.73957 * 19 17 16 21 21 H 1.09003 * 109.46767 * 175.04380 * 1 2 3 22 22 H 1.09000 * 109.47351 * 295.04193 * 1 2 3 23 23 H 1.09001 * 109.47267 * 55.04618 * 1 2 3 24 24 H 0.97003 * 120.00081 * 180.02562 * 7 6 4 25 25 H 1.00900 * 111.00280 * 38.95440 * 12 2 1 26 26 H 1.09002 * 109.47053 * 59.99642 * 13 12 2 27 27 H 1.09006 * 109.46580 * 300.00337 * 13 12 2 28 28 H 1.40998 * 99.99811 * 90.02666 * 18 17 16 29 29 H 1.09003 * 109.47092 * 90.01824 * 20 19 17 30 30 H 1.09004 * 109.47211 * 210.01975 * 20 19 17 31 31 H 1.09003 * 109.47140 * 330.02015 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3601 0.0122 -2.3580 7 7 2.7059 -0.6130 -3.4623 8 14 2.3133 1.8792 -2.3174 9 1 3.5988 2.3951 -1.7821 10 1 2.1055 2.3992 -3.6928 11 1 1.1983 2.3274 -1.4449 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3469 14 6 2.5885 -0.5217 3.5557 15 7 3.8333 -0.6496 3.9185 16 7 3.9097 -1.3462 4.9958 17 6 2.7068 -1.7031 5.3822 18 16 2.3051 -2.6658 6.8023 19 7 1.8264 -1.1927 4.4718 20 6 0.3681 -1.3323 4.4772 21 1 -0.3633 -1.0239 -0.0888 22 1 -0.3634 0.4350 0.9310 23 1 -0.3634 0.5888 -0.8423 24 1 2.9368 -0.1046 -4.2555 25 1 1.4496 -1.4980 1.4099 26 1 1.0871 0.6162 2.5525 27 1 2.7589 1.0461 2.1182 28 1 2.1480 -1.6401 7.7570 29 1 -0.0737 -0.5080 5.0371 30 1 -0.0023 -1.3151 3.4521 31 1 0.0953 -2.2776 4.9463 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308670581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = 63.890256 kcal Electronic energy + Delta-G solvation = -15230.127899 eV Core-core repulsion = 12673.745085 eV Total energy + Delta-G solvation = -2556.382814 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.06377 -38.16954 -36.11251 -34.64434 -32.88703 -30.50803 -28.61098 -27.25580 -26.37593 -23.90168 -22.08626 -21.95183 -19.37430 -18.97393 -17.91471 -17.39756 -16.79640 -16.40081 -15.62493 -15.58685 -15.11072 -14.53165 -14.41811 -13.95727 -13.79616 -13.62421 -13.01066 -12.92754 -12.82534 -12.57121 -12.47121 -12.00462 -11.75586 -11.66024 -11.23100 -11.20164 -10.69003 -10.40107 -9.43514 -9.11736 -8.24023 -6.27014 -0.09223 0.22363 1.28909 1.36946 1.41471 1.48559 1.51910 1.79322 2.37934 3.02983 3.19386 3.58081 3.67621 3.81830 4.27421 4.29863 4.40168 4.55091 4.60750 4.65034 4.73561 4.78697 4.87483 5.07176 5.46914 5.59066 5.68171 5.97792 6.59536 6.61345 6.78904 7.37040 7.44554 8.93673 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.005221 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.568087 B = 5362.076976 C = 5510.063232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.186 3.814 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.028 0.972 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.942 3.058 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.234 1.234 12 N -0.685 5.685 13 C 0.145 3.855 14 C 0.212 3.788 15 N -0.323 5.323 16 N -0.287 5.287 17 C 0.136 3.864 18 S 0.011 5.989 19 N -0.454 5.454 20 C 0.054 3.946 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.264 0.736 25 H 0.336 0.664 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 1.757 21.020 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.078 3.922 3 H 0.060 0.940 4 C -0.537 4.537 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.766 3.234 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.157 1.157 12 N -0.317 5.317 13 C 0.013 3.987 14 C -0.058 4.058 15 N -0.165 5.165 16 N -0.132 5.132 17 C -0.240 4.240 18 S 0.160 5.840 19 N -0.146 5.146 20 C -0.086 4.086 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.402 1.316 21.263 22.901 hybrid contribution -1.529 1.579 -0.709 2.310 sum -9.931 2.895 20.554 23.011 Atomic orbital electron populations 1.22485 0.97704 1.01353 1.00790 1.19518 0.91554 0.94033 0.87129 0.93963 1.21134 1.42539 0.93930 0.96100 0.95398 1.25901 0.94454 1.03706 0.94823 1.70064 1.48586 1.37975 1.02766 0.85831 0.80018 0.79872 0.77661 1.19967 1.21578 1.15653 1.60610 1.59247 1.09370 1.02508 1.20417 1.00919 0.93738 0.83585 1.25359 0.87684 0.97840 0.94960 1.74056 1.17832 1.16452 1.08152 1.74688 1.20226 1.11022 1.07226 1.26428 0.88703 1.07525 1.01353 1.86874 1.90144 1.08528 0.98423 1.47206 1.10918 1.37514 1.18974 1.22680 0.72147 1.07081 1.06734 0.93206 0.91728 0.93608 0.92670 0.84651 0.89981 0.88617 0.90929 0.87131 0.87871 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 9.16 71.98 0.66 -4.94 16 2 C 0.19 7.84 2.23 44.17 0.10 7.94 16 3 H 0.04 1.78 4.95 -2.39 -0.01 1.77 16 4 C -0.50 -27.71 9.19 25.60 0.24 -27.48 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.45 5.47 84.65 0.46 0.91 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.94 42.81 26.99 68.60 1.85 44.66 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.23 -9.20 6.82 99.48 0.68 -8.53 16 12 N -0.69 -25.81 6.22 -499.46 -3.11 -28.92 16 13 C 0.14 4.31 5.69 85.56 0.49 4.79 16 14 C 0.21 6.61 7.58 137.63 1.04 7.66 16 15 N -0.32 -12.45 12.17 -49.53 -0.60 -13.05 16 16 N -0.29 -10.27 12.23 -56.85 -0.70 -10.96 16 17 C 0.14 3.62 8.37 179.55 1.50 5.13 16 18 S 0.01 0.19 25.78 -56.49 -1.46 -1.26 16 19 N -0.45 -10.74 3.21 -536.43 -1.72 -12.47 16 20 C 0.05 0.66 10.79 127.77 1.38 2.03 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.63 7.35 -2.39 -0.02 1.62 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.34 11.57 8.47 -89.69 -0.76 10.81 16 26 H 0.08 1.78 7.18 -2.39 -0.02 1.77 16 27 H 0.10 3.05 8.06 -2.38 -0.02 3.03 16 28 H 0.13 1.45 9.55 73.80 0.70 2.15 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.16 7.91 -2.38 -0.02 1.15 16 31 H 0.12 1.03 7.86 -2.39 -0.02 1.01 16 Total: -1.00 -75.64 282.20 1.52 -74.12 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.08 Total: 11.22 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.87 Total: -3.96 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -5.83 Total: -124.78 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.85 Total: 44.66 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.46 Total: -1.26 kcal Total: -75.64 1.52 -74.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308670581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.015 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds