Wall clock time and date at job start Mon Mar 30 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.40155 * 111.00258 * 123.95436 * 2 1 3 13 13 C 1.38662 * 120.06141 * 296.04836 * 12 2 1 14 14 C 1.38421 * 120.00083 * 179.97438 * 13 12 2 15 15 F 1.35100 * 119.94097 * 180.02562 * 14 13 12 16 16 C 1.38622 * 120.12110 * 359.97438 * 14 13 12 17 17 F 1.35103 * 119.93823 * 180.02562 * 16 14 13 18 18 C 1.38424 * 120.12181 * 0.02562 * 16 14 13 19 19 C 1.38664 * 120.00154 * 359.73768 * 18 16 14 20 20 N 1.40155 * 120.06119 * 180.27917 * 19 18 16 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 25 25 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 26 26 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.99942 * 359.94944 * 13 12 2 28 28 H 1.08009 * 119.99835 * 180.02562 * 18 16 14 29 29 H 0.96998 * 119.99851 * 180.23127 * 20 19 18 30 30 H 0.96996 * 120.00077 * 0.23738 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9713 -0.7308 1.0853 13 6 1.7283 -0.3041 2.3821 14 6 2.2246 -1.0271 3.4531 15 9 1.9866 -0.6106 4.7160 16 6 2.9644 -2.1784 3.2321 17 9 3.4466 -2.8816 4.2802 18 6 3.2100 -2.6090 1.9397 19 6 2.7112 -1.8913 0.8632 20 7 2.9542 -2.3293 -0.4458 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 1.9894 4.8549 -2.8240 27 1 1.1521 0.5926 2.5565 28 1 3.7864 -3.5065 1.7698 29 1 2.6076 -1.8247 -1.1982 30 1 3.4688 -3.1370 -0.5993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309002583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:31 Heat of formation + Delta-G solvation = -73.489306 kcal Electronic energy + Delta-G solvation = -17229.448473 eV Core-core repulsion = 14080.975296 eV Total energy + Delta-G solvation = -3148.473177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.39725 -49.46204 -40.88766 -37.50839 -35.08549 -34.62286 -31.15390 -29.91698 -28.98504 -26.54192 -24.55688 -23.24532 -21.93225 -19.29785 -18.96106 -18.66757 -18.05672 -17.26709 -16.72591 -16.59997 -16.34630 -15.91612 -15.83078 -15.60244 -15.06972 -14.87663 -14.44894 -14.06551 -13.93556 -13.63983 -13.20454 -12.93857 -12.72052 -12.39265 -12.19599 -11.92730 -11.50279 -11.26281 -10.78856 -9.87878 -9.37104 -8.43911 -8.28753 -6.31681 -0.05385 0.19837 1.33735 1.36270 1.44829 2.32769 2.41567 2.73484 2.94136 3.05632 3.18408 3.42038 3.66425 4.09152 4.31554 4.53678 4.59912 4.66539 4.78636 4.84282 4.85986 4.93101 5.14460 5.23654 5.51249 5.66934 5.92258 6.21843 6.44258 6.73056 6.75241 7.06594 7.31835 8.86728 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.027993 B = 0.007166 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.997154 B = 3906.545720 C = 4344.025219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.492 5.492 3 C 0.177 3.823 4 C -0.512 4.512 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.942 5.942 8 Si 0.933 3.067 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.255 1.255 12 C 0.020 3.980 13 C -0.113 4.113 14 C -0.009 4.009 15 F -0.148 7.148 16 C 0.108 3.892 17 F -0.133 7.133 18 C -0.197 4.197 19 C 0.264 3.736 20 N -0.843 5.843 21 H 0.063 0.937 22 H 0.023 0.977 23 H 0.078 0.922 24 H -0.008 1.008 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.133 0.867 28 H 0.177 0.823 29 H 0.413 0.587 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -13.687 9.101 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.212 5.212 3 C 0.051 3.949 4 C -0.550 4.550 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.583 5.583 8 Si 0.758 3.242 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.179 1.179 12 C -0.079 4.079 13 C -0.135 4.135 14 C -0.032 4.032 15 F -0.127 7.127 16 C 0.087 3.913 17 F -0.112 7.112 18 C -0.222 4.222 19 C 0.153 3.847 20 N -0.380 5.380 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.009 0.991 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.194 0.806 29 H 0.243 0.757 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.808 -13.759 8.608 16.471 hybrid contribution 0.054 1.275 1.046 1.650 sum 2.863 -12.484 9.654 16.039 Atomic orbital electron populations 1.22298 0.85735 1.01551 1.00815 1.59549 1.08780 1.14883 1.38015 1.20018 0.94926 0.84703 0.95258 1.21181 1.34889 0.97379 1.01563 0.93084 1.25666 0.96883 0.98432 0.97195 1.70011 1.48368 1.13938 1.25959 0.85921 0.79720 0.78056 0.80544 1.19217 1.20814 1.17926 1.18504 1.03891 0.96778 0.88727 1.21386 1.00204 1.00069 0.91792 1.17322 1.08307 0.97999 0.79591 1.91436 1.93630 1.90195 1.37433 1.17334 0.98227 0.90785 0.84913 1.91489 1.86106 1.77461 1.56135 1.20426 1.08949 1.04941 0.87845 1.17387 0.90461 0.90021 0.86822 1.42545 1.60820 1.31252 1.03426 0.91858 0.95832 0.90368 0.99054 0.95809 0.92416 0.84930 0.80552 0.75652 0.75642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 9.09 127.69 1.16 2.65 16 2 N -0.49 -18.40 3.89 -723.67 -2.82 -21.22 16 3 C 0.18 8.02 3.38 85.55 0.29 8.31 16 4 C -0.51 -27.78 9.07 25.60 0.23 -27.55 16 5 H 0.05 3.03 7.35 -2.91 -0.02 3.01 16 6 C 0.02 0.92 5.47 84.66 0.46 1.38 16 7 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 8 Si 0.93 43.09 27.47 68.60 1.88 44.97 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.26 -11.21 6.54 99.48 0.65 -10.56 16 12 C 0.02 0.65 4.70 38.19 0.18 0.83 16 13 C -0.11 -3.65 8.69 22.41 0.19 -3.45 16 14 C -0.01 -0.29 7.30 22.41 0.16 -0.12 16 15 F -0.15 -4.81 17.17 44.97 0.77 -4.04 16 16 C 0.11 2.94 7.30 22.41 0.16 3.11 16 17 F -0.13 -3.60 17.17 44.97 0.77 -2.83 16 18 C -0.20 -4.49 9.87 22.42 0.22 -4.27 16 19 C 0.26 6.94 6.78 38.19 0.26 7.20 16 20 N -0.84 -18.15 9.09 -50.92 -0.46 -18.61 16 21 H 0.06 2.47 6.86 -2.39 -0.02 2.45 16 22 H 0.02 0.79 7.48 -2.39 -0.02 0.77 16 23 H 0.08 2.27 8.13 -2.38 -0.02 2.25 16 24 H -0.01 -0.38 6.54 -2.39 -0.02 -0.39 16 25 H 0.02 1.10 7.49 -2.39 -0.02 1.08 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.13 4.40 7.17 -2.91 -0.02 4.38 16 28 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.41 10.34 8.11 -92.71 -0.75 9.59 16 30 H 0.41 5.84 8.85 -92.71 -0.82 5.02 16 Total: -1.00 -62.20 265.48 3.35 -58.86 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -0.43 Total: 11.26 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.33 Total: -11.91 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -2.98 Total: -96.31 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 1.54 Total: -6.87 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -62.20 3.35 -58.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309002583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.633 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds