Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47359 * 240.00091 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46804 * 120.00553 * 3 2 1 7 7 C 1.40054 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00092 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00130 * 5.00191 * 9 7 2 11 11 N 1.34776 * 119.99708 * 185.00969 * 9 7 2 12 12 C 1.46922 * 120.63189 * 354.75727 * 11 9 7 13 13 C 1.53191 * 108.77680 * 233.58850 * 12 11 9 14 14 C 1.53034 * 109.31328 * 305.36474 * 13 12 11 15 15 C 1.53046 * 109.53916 * 61.36634 * 14 13 12 16 16 O 1.42894 * 109.49470 * 58.61435 * 15 14 13 17 17 C 1.50693 * 109.49791 * 178.68506 * 15 14 13 18 18 N 1.34783 * 119.99623 * 205.00097 * 17 15 14 19 19 O 1.21278 * 120.00668 * 24.72053 * 17 15 14 20 20 C 1.46930 * 120.62963 * 174.73690 * 11 9 7 21 21 H 0.96998 * 119.99551 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.58553 * 113.80042 * 12 11 9 23 23 H 1.09003 * 109.70561 * 353.45049 * 12 11 9 24 24 H 1.09000 * 109.49432 * 185.41455 * 13 12 11 25 25 H 1.08998 * 109.52077 * 65.33480 * 13 12 11 26 26 H 1.08999 * 109.46428 * 301.34524 * 14 13 12 27 27 H 1.08999 * 109.46242 * 181.38323 * 14 13 12 28 28 H 0.96705 * 113.99684 * 180.02562 * 16 15 14 29 29 H 0.96995 * 120.00198 * 359.97438 * 18 17 15 30 30 H 0.97005 * 119.99445 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.58293 * 6.62986 * 20 11 9 32 32 H 1.09000 * 109.58807 * 246.19907 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6962 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0616 -2.4824 -0.0940 11 7 1.9450 -3.6456 0.0997 12 6 3.4141 -3.6670 0.0968 13 6 3.8909 -4.6351 -0.9905 14 6 3.2428 -6.0036 -0.7694 15 6 1.7215 -5.8723 -0.8730 16 8 1.3740 -5.3546 -2.1587 17 6 1.0860 -7.2260 -0.6871 18 7 -0.1295 -7.4776 -1.2124 19 8 1.6704 -8.0907 -0.0693 20 6 1.2201 -4.9183 0.2158 21 1 -0.4849 0.8401 0.0004 22 1 3.7766 -4.0019 1.0687 23 1 3.7958 -2.6674 -0.1109 24 1 4.9753 -4.7335 -0.9398 25 1 3.6058 -4.2515 -1.9702 26 1 3.5086 -6.3758 0.2200 27 1 3.5994 -6.7011 -1.5273 28 1 0.4229 -5.2447 -2.2944 29 1 -0.5953 -6.7873 -1.7097 30 1 -0.5387 -8.3489 -1.0925 31 1 0.1522 -4.7438 0.0850 32 1 1.4037 -5.3552 1.1974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309044843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -123.418813 kcal Electronic energy + Delta-G solvation = -18315.486851 eV Core-core repulsion = 15275.936084 eV Total energy + Delta-G solvation = -3039.550767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30718 -38.12729 -36.42859 -34.86923 -33.36078 -32.61391 -31.32882 -30.09463 -26.58093 -24.44708 -23.73626 -21.25558 -19.92479 -19.25634 -18.18585 -16.82779 -16.47204 -15.86997 -15.65522 -14.61422 -14.55533 -14.23023 -14.19101 -13.77742 -13.21666 -12.91247 -12.54268 -12.18502 -11.83257 -11.71271 -11.21259 -11.14713 -10.98532 -10.80456 -10.47510 -10.29850 -10.08740 -9.95516 -9.73391 -9.43708 -8.88303 -7.66258 -7.27962 -6.24915 -4.69143 2.56854 3.13380 3.18576 3.19955 3.42254 4.05292 4.37339 4.45934 4.51010 4.82607 5.03220 5.12782 5.49858 5.64411 5.72044 5.91684 6.04562 6.15299 6.21220 6.24458 6.36876 6.53463 6.70775 6.83368 7.17640 7.41871 7.49792 7.73467 8.06852 8.19345 8.27818 8.97696 9.35606 10.51097 10.69713 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.007014 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.674389 B = 3990.897362 C = 4392.458663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.563 3.437 10 O -0.581 6.581 11 N -0.630 5.630 12 C 0.119 3.881 13 C -0.132 4.132 14 C -0.086 4.086 15 C 0.106 3.894 16 O -0.534 6.534 17 C 0.503 3.497 18 N -0.852 5.852 19 O -0.541 6.541 20 C 0.105 3.895 21 H 0.269 0.731 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.373 0.627 29 H 0.401 0.599 30 H 0.400 0.600 31 H 0.090 0.910 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -8.770 -2.635 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.370 3.630 10 O -0.464 6.464 11 N -0.368 5.368 12 C -0.005 4.005 13 C -0.170 4.170 14 C -0.124 4.124 15 C 0.060 3.940 16 O -0.339 6.339 17 C 0.287 3.713 18 N -0.416 5.416 19 O -0.418 6.418 20 C -0.021 4.021 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.114 0.886 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.221 0.779 29 H 0.230 0.770 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.437 -9.059 -2.331 9.965 hybrid contribution -0.614 0.612 -0.144 0.879 sum 2.823 -8.447 -2.475 9.244 Atomic orbital electron populations 1.69999 1.07078 1.27467 1.35131 1.25728 0.94633 1.00320 0.92513 0.86437 0.79866 0.80988 0.79532 1.19180 1.20550 1.19223 1.20939 0.93627 0.89107 1.54171 0.90838 1.18228 0.86858 0.82046 0.75912 1.90571 1.14397 1.86040 1.55381 1.48044 1.04868 1.04661 1.79228 1.21490 0.82088 1.00612 0.96299 1.21920 0.99084 0.94675 1.01368 1.21291 0.89916 0.98381 1.02816 1.21959 0.97400 0.88304 0.86306 1.86648 1.28751 1.86637 1.31893 1.21586 0.81226 0.90806 0.77688 1.43877 1.20481 1.18850 1.58419 1.90708 1.62722 1.47348 1.40980 1.21626 0.99049 0.85982 0.95474 0.92016 0.93856 0.88635 0.91512 0.90621 0.89955 0.91650 0.77935 0.76970 0.76940 0.89144 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.40 11.84 55.55 0.66 -21.75 16 2 C 0.09 2.39 5.50 -17.36 -0.10 2.29 16 3 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.82 8.86 -35.63 -0.32 -15.14 16 8 H 0.07 1.83 5.69 -52.49 -0.30 1.53 16 9 C 0.56 15.50 7.62 -12.99 -0.10 15.41 16 10 O -0.58 -17.92 14.46 5.20 0.08 -17.84 16 11 N -0.63 -13.97 2.91 -174.42 -0.51 -14.48 16 12 C 0.12 2.21 6.31 -3.71 -0.02 2.19 16 13 C -0.13 -2.10 5.94 -26.61 -0.16 -2.26 16 14 C -0.09 -1.36 4.42 -26.69 -0.12 -1.48 16 15 C 0.11 1.72 0.95 -91.65 -0.09 1.64 16 16 O -0.53 -8.68 12.07 -35.23 -0.43 -9.10 16 17 C 0.50 7.63 7.00 -10.99 -0.08 7.55 16 18 N -0.85 -9.23 8.78 31.22 0.27 -8.96 16 19 O -0.54 -9.78 16.96 5.56 0.09 -9.69 16 20 C 0.10 2.00 5.35 -3.71 -0.02 1.98 16 21 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.10 1.84 5.38 -51.93 -0.28 1.56 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.08 1.33 7.61 -51.93 -0.40 0.94 16 26 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.37 4.99 7.58 45.56 0.35 5.34 16 29 H 0.40 3.51 7.33 -40.82 -0.30 3.21 16 30 H 0.40 3.62 8.93 -40.82 -0.36 3.25 16 31 H 0.09 1.83 6.99 -51.93 -0.36 1.47 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -35.35 268.14 -4.70 -40.05 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -2.89 Total: 10.92 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -0.99 Total: 12.18 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.42 Total: -45.19 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.26 Total: -36.63 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -35.35 -4.70 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309044843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.370 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds