Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47359 * 240.00091 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46804 * 120.00553 * 3 2 1 7 7 C 1.40054 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00092 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00130 * 5.00191 * 9 7 2 11 11 N 1.34776 * 119.99708 * 185.00969 * 9 7 2 12 12 C 1.46922 * 120.63189 * 354.75727 * 11 9 7 13 13 C 1.53191 * 108.77680 * 233.58850 * 12 11 9 14 14 C 1.53034 * 109.31328 * 305.36474 * 13 12 11 15 15 C 1.53046 * 109.53916 * 61.36634 * 14 13 12 16 16 O 1.42894 * 109.49470 * 58.61435 * 15 14 13 17 17 C 1.50693 * 109.49791 * 178.68506 * 15 14 13 18 18 N 1.34783 * 119.99623 * 205.00097 * 17 15 14 19 19 O 1.21278 * 120.00668 * 24.72053 * 17 15 14 20 20 C 1.46930 * 120.62963 * 174.73690 * 11 9 7 21 21 H 0.96998 * 119.99551 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.58553 * 113.80042 * 12 11 9 23 23 H 1.09003 * 109.70561 * 353.45049 * 12 11 9 24 24 H 1.09000 * 109.49432 * 185.41455 * 13 12 11 25 25 H 1.08998 * 109.52077 * 65.33480 * 13 12 11 26 26 H 1.08999 * 109.46428 * 301.34524 * 14 13 12 27 27 H 1.08999 * 109.46242 * 181.38323 * 14 13 12 28 28 H 0.96705 * 113.99684 * 180.02562 * 16 15 14 29 29 H 0.96995 * 120.00198 * 359.97438 * 18 17 15 30 30 H 0.97005 * 119.99445 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.58293 * 6.62986 * 20 11 9 32 32 H 1.09000 * 109.58807 * 246.19907 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6962 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0616 -2.4824 -0.0940 11 7 1.9450 -3.6456 0.0997 12 6 3.4141 -3.6670 0.0968 13 6 3.8909 -4.6351 -0.9905 14 6 3.2428 -6.0036 -0.7694 15 6 1.7215 -5.8723 -0.8730 16 8 1.3740 -5.3546 -2.1587 17 6 1.0860 -7.2260 -0.6871 18 7 -0.1295 -7.4776 -1.2124 19 8 1.6704 -8.0907 -0.0693 20 6 1.2201 -4.9183 0.2158 21 1 -0.4849 0.8401 0.0004 22 1 3.7766 -4.0019 1.0687 23 1 3.7958 -2.6674 -0.1109 24 1 4.9753 -4.7335 -0.9398 25 1 3.6058 -4.2515 -1.9702 26 1 3.5086 -6.3758 0.2200 27 1 3.5994 -6.7011 -1.5273 28 1 0.4229 -5.2447 -2.2944 29 1 -0.5953 -6.7873 -1.7097 30 1 -0.5387 -8.3489 -1.0925 31 1 0.1522 -4.7438 0.0850 32 1 1.4037 -5.3552 1.1974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309044843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = -154.454131 kcal Electronic energy + Delta-G solvation = -18316.832644 eV Core-core repulsion = 15275.936084 eV Total energy + Delta-G solvation = -3040.896559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63787 -39.73217 -38.06250 -36.41546 -34.67834 -34.49389 -32.93157 -31.55500 -28.53693 -26.01995 -25.20386 -22.67415 -21.47199 -20.75296 -19.47056 -18.25971 -17.95274 -17.77306 -17.15826 -16.31232 -16.00445 -15.65221 -15.55001 -15.24145 -14.75125 -14.50184 -14.23817 -13.68432 -13.44079 -13.23097 -13.00815 -12.74276 -12.71152 -12.36102 -12.04667 -11.86217 -11.64005 -11.47405 -10.90138 -10.80428 -10.75392 -9.76884 -9.07113 -8.27618 -6.81159 1.32921 1.42571 1.45192 1.56250 2.21739 2.31959 2.48947 2.85765 3.12645 3.52381 3.59537 3.75093 3.89148 4.17562 4.29860 4.48301 4.62520 4.66136 4.87271 4.93810 5.01962 5.07600 5.42682 5.47976 5.74932 5.76873 6.11805 6.13739 6.35320 6.56544 6.90554 7.11753 7.40979 8.47185 8.68221 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.007014 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.674389 B = 3990.897362 C = 4392.458663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.547 3.453 10 O -0.628 6.628 11 N -0.632 5.632 12 C 0.112 3.888 13 C -0.120 4.120 14 C -0.087 4.087 15 C 0.113 3.887 16 O -0.543 6.543 17 C 0.506 3.494 18 N -0.829 5.829 19 O -0.570 6.570 20 C 0.104 3.896 21 H 0.274 0.726 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.383 0.617 29 H 0.413 0.587 30 H 0.413 0.587 31 H 0.072 0.928 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -8.924 -2.946 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.605 4.605 8 H 0.111 0.889 9 C 0.354 3.646 10 O -0.515 6.515 11 N -0.368 5.368 12 C -0.011 4.011 13 C -0.159 4.159 14 C -0.125 4.125 15 C 0.068 3.932 16 O -0.350 6.350 17 C 0.289 3.711 18 N -0.395 5.395 19 O -0.449 6.449 20 C -0.022 4.022 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.233 0.767 29 H 0.244 0.756 30 H 0.246 0.754 31 H 0.091 0.909 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.098 -9.261 -2.663 10.902 hybrid contribution -1.169 0.571 -0.049 1.302 sum 3.929 -8.690 -2.712 9.915 Atomic orbital electron populations 1.70164 1.09393 1.28906 1.36560 1.26921 0.95483 1.04726 0.91229 0.85153 0.78321 0.75095 0.80297 1.17883 1.20075 1.17827 1.21484 0.94850 0.89799 1.54409 0.88911 1.18547 0.86555 0.83822 0.75695 1.90522 1.16302 1.87249 1.57453 1.47869 1.06505 1.04413 1.78047 1.21714 0.79814 1.01139 0.98423 1.21823 1.01175 0.93778 0.99080 1.21337 0.89276 0.98406 1.03493 1.21803 0.98127 0.88214 0.85071 1.86626 1.29935 1.86721 1.31726 1.21280 0.82120 0.89920 0.77784 1.43680 1.19024 1.19838 1.56930 1.90702 1.63774 1.47915 1.42558 1.21712 0.97928 0.85445 0.97077 0.91651 0.91920 0.89589 0.87956 0.92435 0.89468 0.90525 0.76736 0.75583 0.75410 0.90914 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.05 11.84 21.84 0.26 -48.79 16 2 C 0.03 1.72 5.50 85.31 0.47 2.19 16 3 Si 0.99 40.01 29.56 68.60 2.03 42.04 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.57 -31.37 8.86 24.83 0.22 -31.15 16 8 H 0.09 4.57 5.69 -2.92 -0.02 4.55 16 9 C 0.55 30.82 7.62 86.36 0.66 31.48 16 10 O -0.63 -40.21 14.46 -4.32 -0.06 -40.28 16 11 N -0.63 -28.09 2.91 -823.97 -2.40 -30.49 16 12 C 0.11 4.01 6.31 86.36 0.54 4.55 16 13 C -0.12 -3.57 5.94 30.67 0.18 -3.38 16 14 C -0.09 -2.56 4.42 30.62 0.14 -2.43 16 15 C 0.11 3.56 0.95 -11.46 -0.01 3.55 16 16 O -0.54 -17.17 12.07 -148.98 -1.80 -18.97 16 17 C 0.51 14.59 7.00 87.65 0.61 15.20 16 18 N -0.83 -16.57 8.78 -173.53 -1.52 -18.10 16 19 O -0.57 -19.72 16.96 -3.02 -0.05 -19.77 16 20 C 0.10 3.96 5.35 86.36 0.46 4.42 16 21 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 22 H 0.06 2.00 8.14 -2.38 -0.02 1.99 16 23 H 0.09 3.23 5.38 -2.39 -0.01 3.21 16 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 1.93 7.61 -2.39 -0.02 1.91 16 26 H 0.09 2.50 7.92 -2.39 -0.02 2.49 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.38 10.07 7.58 -74.05 -0.56 9.51 16 29 H 0.41 6.58 7.33 -92.71 -0.68 5.90 16 30 H 0.41 6.62 8.93 -92.70 -0.83 5.79 16 31 H 0.07 3.02 6.99 -2.39 -0.02 3.00 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -77.66 268.14 -1.15 -78.82 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.88 Total: 31.10 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 3.27 Total: 24.44 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.67 Total: -97.38 kcal Atomic # 8 Polarization: -77.10 SS G_CDS: -1.91 Total: -79.02 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -77.66 -1.15 -78.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309044843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.636 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds