Wall clock time and date at job start Mon Mar 30 2020 04:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.27317 * 2 1 4 4 H 1.08002 * 120.00299 * 120.70506 * 3 2 1 5 5 C 1.37884 * 119.99942 * 300.42065 * 3 2 1 6 6 N 1.31514 * 119.99698 * 0.28408 * 5 3 2 7 7 Si 1.86794 * 119.99837 * 180.27476 * 5 3 2 8 8 H 1.48504 * 109.47196 * 60.00645 * 7 5 3 9 9 H 1.48504 * 109.46887 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47679 * 300.00280 * 7 5 3 11 11 C 1.54897 * 110.31433 * 122.09605 * 2 1 3 12 12 C 1.55185 * 100.89737 * 82.30057 * 11 2 1 13 13 C 1.54829 * 102.39724 * 34.47998 * 12 11 2 14 14 C 1.54559 * 107.37817 * 222.90212 * 13 12 11 15 15 O 1.39891 * 108.98575 * 161.13492 * 14 13 12 16 16 C 1.44709 * 117.29843 * 92.94829 * 15 14 13 17 17 C 1.54030 * 111.97812 * 318.46143 * 16 15 14 18 18 O 1.40137 * 112.41076 * 319.11421 * 17 16 15 19 19 C 1.43953 * 113.14124 * 93.30508 * 18 17 16 20 20 O 1.43499 * 110.31253 * 237.90584 * 2 1 3 21 21 H 1.09000 * 109.47075 * 59.30410 * 1 2 3 22 22 H 1.09008 * 109.46729 * 179.29849 * 1 2 3 23 23 H 1.08993 * 109.47166 * 299.29579 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 6 5 3 25 25 H 1.09001 * 111.13264 * 200.21633 * 11 2 1 26 26 H 1.08999 * 111.12801 * 324.34825 * 11 2 1 27 27 H 1.09003 * 110.81913 * 152.70533 * 12 11 2 28 28 H 1.08998 * 110.82427 * 276.05233 * 12 11 2 29 29 H 1.09001 * 109.55255 * 280.98920 * 14 13 12 30 30 H 1.09005 * 109.54964 * 41.28598 * 14 13 12 31 31 H 1.09000 * 108.98217 * 197.81897 * 16 15 14 32 32 H 1.08996 * 108.98484 * 79.10513 * 16 15 14 33 33 H 1.09000 * 108.89605 * 198.36117 * 17 16 15 34 34 H 1.09001 * 108.81815 * 79.81465 * 17 16 15 35 35 H 1.09001 * 108.98622 * 158.99963 * 19 18 17 36 36 H 1.08999 * 108.99199 * 40.27008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4137 0.0000 4 1 2.6873 1.7548 0.8042 5 6 1.7239 2.2699 -1.0297 6 7 0.9505 1.8545 -2.0090 7 14 2.3774 4.0198 -1.0336 8 1 3.8621 3.9937 -1.0485 9 1 1.8823 4.7303 -2.2400 10 1 1.9069 4.7267 0.1846 11 6 2.0677 -0.7718 1.2306 12 6 1.9781 -2.2350 0.7213 13 6 2.3000 -2.0828 -0.7855 14 6 1.3061 -2.9759 -1.5623 15 8 1.2638 -2.5563 -2.8961 16 6 2.1525 -3.2165 -3.8280 17 6 3.5513 -3.4473 -3.2258 18 8 3.9982 -2.3503 -2.4769 19 6 3.6916 -2.4600 -1.0747 20 8 2.0281 -0.7150 -1.1401 21 1 -0.3633 0.5246 -0.8837 22 1 -0.3633 -1.0277 -0.0126 23 1 -0.3633 0.5028 0.8962 24 1 0.7192 2.4570 -2.7332 25 1 3.0989 -0.4940 1.4489 26 1 1.4294 -0.6180 2.1006 27 1 2.7201 -2.8630 1.2145 28 1 0.9751 -2.6356 0.8679 29 1 1.6359 -4.0139 -1.5167 30 1 0.3137 -2.8872 -1.1203 31 1 2.2488 -2.6013 -4.7226 32 1 1.7232 -4.1790 -4.1062 33 1 4.2576 -3.6335 -4.0349 34 1 3.5157 -4.3246 -2.5799 35 1 4.3600 -1.8070 -0.5135 36 1 3.8537 -3.4895 -0.7556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309106032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:15 Heat of formation + Delta-G solvation = -120.822724 kcal Electronic energy + Delta-G solvation = -19443.918022 eV Core-core repulsion = 16508.020173 eV Total energy + Delta-G solvation = -2935.897849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89873 -37.62241 -36.07993 -33.19980 -31.26024 -30.88593 -29.04559 -26.90365 -26.29127 -25.11596 -22.61294 -21.63183 -19.88067 -19.18760 -16.74983 -16.40884 -16.09879 -15.66356 -15.21973 -14.50895 -14.11856 -13.85464 -13.68851 -13.49984 -12.81605 -12.40134 -12.08884 -11.93310 -11.39166 -11.21252 -10.95633 -10.80859 -10.65219 -10.57379 -10.46232 -10.30892 -10.08322 -9.95195 -9.84423 -9.14209 -8.91214 -8.78321 -8.34599 -7.70165 -5.82882 -3.99805 3.39414 3.44402 3.46402 3.99425 4.38689 4.51830 4.99890 5.08392 5.17824 5.23696 5.39120 5.46905 5.51643 5.55323 5.67148 5.71096 5.75178 5.95980 6.07390 6.15974 6.23524 6.47098 6.55763 6.60309 6.71545 6.82867 6.99330 7.17746 7.39393 7.61286 7.88002 7.96084 8.24325 8.47057 8.77923 9.18168 9.70300 11.18757 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.009481 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.136164 B = 2952.629667 C = 3257.505432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.228 3.772 3 C -0.528 4.528 4 H 0.059 0.941 5 C 0.082 3.918 6 N -0.851 5.851 7 Si 0.887 3.113 8 H -0.277 1.277 9 H -0.287 1.287 10 H -0.278 1.278 11 C -0.142 4.142 12 C -0.146 4.146 13 C 0.038 3.962 14 C 0.066 3.934 15 O -0.353 6.353 16 C 0.034 3.966 17 C 0.029 3.971 18 O -0.349 6.349 19 C 0.071 3.929 20 O -0.309 6.309 21 H 0.090 0.910 22 H 0.008 0.992 23 H 0.031 0.969 24 H 0.259 0.741 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -11.727 1.120 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.191 3.809 3 C -0.565 4.565 4 H 0.077 0.923 5 C -0.124 4.124 6 N -0.487 5.487 7 Si 0.715 3.285 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.204 1.204 11 C -0.180 4.180 12 C -0.183 4.183 13 C -0.004 4.004 14 C -0.012 4.012 15 O -0.270 6.270 16 C -0.044 4.044 17 C -0.049 4.049 18 O -0.266 6.266 19 C -0.006 4.006 20 O -0.228 6.228 21 H 0.108 0.892 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.339 -11.286 0.595 11.541 hybrid contribution 0.329 0.278 0.381 0.575 sum 2.668 -11.008 0.975 11.369 Atomic orbital electron populations 1.22104 0.98258 0.97333 1.02469 1.19887 0.90473 0.90581 0.79999 1.20904 1.32998 0.94091 1.08548 0.92308 1.25007 0.94222 0.97999 0.95148 1.69974 1.33901 1.34971 1.09840 0.86768 0.79534 0.84984 0.77250 1.20218 1.21278 1.20359 1.23302 1.01237 0.93021 1.00399 1.23150 1.01104 0.99077 0.95015 1.22448 0.93969 0.90413 0.93601 1.22930 0.99889 0.94792 0.83622 1.87615 1.59456 1.62818 1.17116 1.23711 0.89910 0.97086 0.93646 1.22895 0.96083 0.89474 0.96472 1.87820 1.77201 1.42742 1.18869 1.21923 0.96833 0.99618 0.82187 1.89135 1.84268 1.14447 1.34972 0.89162 0.97263 0.94974 0.93055 0.91812 0.91927 0.92057 0.91196 0.94810 0.89820 0.89185 0.93390 0.89565 0.93854 0.88786 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.63 37.16 0.32 -3.27 16 2 C 0.23 5.82 0.72 -90.77 -0.07 5.75 16 3 C -0.53 -14.92 8.29 -34.44 -0.29 -15.21 16 4 H 0.06 1.62 7.76 -52.49 -0.41 1.22 16 5 C 0.08 2.36 5.28 -17.82 -0.09 2.27 16 6 N -0.85 -25.45 11.02 55.43 0.61 -24.84 16 7 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C -0.14 -2.94 6.00 -24.57 -0.15 -3.09 16 12 C -0.15 -2.56 5.67 -24.61 -0.14 -2.70 16 13 C 0.04 0.76 0.85 -91.69 -0.08 0.68 16 14 C 0.07 1.22 5.38 37.98 0.20 1.42 16 15 O -0.35 -7.41 9.81 -59.23 -0.58 -7.99 16 16 C 0.03 0.54 7.14 37.69 0.27 0.81 16 17 C 0.03 0.44 6.13 37.69 0.23 0.67 16 18 O -0.35 -6.85 10.46 -52.72 -0.55 -7.40 16 19 C 0.07 1.29 5.08 34.30 0.17 1.46 16 20 O -0.31 -8.14 9.13 -58.24 -0.53 -8.67 16 21 H 0.09 2.54 6.08 -51.93 -0.32 2.22 16 22 H 0.01 0.19 6.97 -51.92 -0.36 -0.17 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 26 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 27 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 28 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 29 H 0.03 0.51 7.11 -51.93 -0.37 0.14 16 30 H 0.08 1.56 7.08 -51.93 -0.37 1.19 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.55 6.76 -51.93 -0.35 0.20 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.05 0.68 7.46 -51.93 -0.39 0.29 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -32.80 279.64 -6.89 -39.69 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.42 Total: -0.65 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 0.39 Total: -11.20 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.61 Total: -24.84 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.66 Total: -24.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.80 -6.89 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309106032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.136 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds