Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.27317 * 2 1 4 4 H 1.08002 * 120.00299 * 120.70506 * 3 2 1 5 5 C 1.37884 * 119.99942 * 300.42065 * 3 2 1 6 6 N 1.31514 * 119.99698 * 0.28408 * 5 3 2 7 7 Si 1.86794 * 119.99837 * 180.27476 * 5 3 2 8 8 H 1.48504 * 109.47196 * 60.00645 * 7 5 3 9 9 H 1.48504 * 109.46887 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47679 * 300.00280 * 7 5 3 11 11 C 1.54897 * 110.31433 * 122.09605 * 2 1 3 12 12 C 1.55185 * 100.89737 * 82.30057 * 11 2 1 13 13 C 1.54829 * 102.39724 * 34.47998 * 12 11 2 14 14 C 1.54559 * 107.37817 * 222.90212 * 13 12 11 15 15 O 1.39891 * 108.98575 * 161.13492 * 14 13 12 16 16 C 1.44709 * 117.29843 * 92.94829 * 15 14 13 17 17 C 1.54030 * 111.97812 * 318.46143 * 16 15 14 18 18 O 1.40137 * 112.41076 * 319.11421 * 17 16 15 19 19 C 1.43953 * 113.14124 * 93.30508 * 18 17 16 20 20 O 1.43499 * 110.31253 * 237.90584 * 2 1 3 21 21 H 1.09000 * 109.47075 * 59.30410 * 1 2 3 22 22 H 1.09008 * 109.46729 * 179.29849 * 1 2 3 23 23 H 1.08993 * 109.47166 * 299.29579 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 6 5 3 25 25 H 1.09001 * 111.13264 * 200.21633 * 11 2 1 26 26 H 1.08999 * 111.12801 * 324.34825 * 11 2 1 27 27 H 1.09003 * 110.81913 * 152.70533 * 12 11 2 28 28 H 1.08998 * 110.82427 * 276.05233 * 12 11 2 29 29 H 1.09001 * 109.55255 * 280.98920 * 14 13 12 30 30 H 1.09005 * 109.54964 * 41.28598 * 14 13 12 31 31 H 1.09000 * 108.98217 * 197.81897 * 16 15 14 32 32 H 1.08996 * 108.98484 * 79.10513 * 16 15 14 33 33 H 1.09000 * 108.89605 * 198.36117 * 17 16 15 34 34 H 1.09001 * 108.81815 * 79.81465 * 17 16 15 35 35 H 1.09001 * 108.98622 * 158.99963 * 19 18 17 36 36 H 1.08999 * 108.99199 * 40.27008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4137 0.0000 4 1 2.6873 1.7548 0.8042 5 6 1.7239 2.2699 -1.0297 6 7 0.9505 1.8545 -2.0090 7 14 2.3774 4.0198 -1.0336 8 1 3.8621 3.9937 -1.0485 9 1 1.8823 4.7303 -2.2400 10 1 1.9069 4.7267 0.1846 11 6 2.0677 -0.7718 1.2306 12 6 1.9781 -2.2350 0.7213 13 6 2.3000 -2.0828 -0.7855 14 6 1.3061 -2.9759 -1.5623 15 8 1.2638 -2.5563 -2.8961 16 6 2.1525 -3.2165 -3.8280 17 6 3.5513 -3.4473 -3.2258 18 8 3.9982 -2.3503 -2.4769 19 6 3.6916 -2.4600 -1.0747 20 8 2.0281 -0.7150 -1.1401 21 1 -0.3633 0.5246 -0.8837 22 1 -0.3633 -1.0277 -0.0126 23 1 -0.3633 0.5028 0.8962 24 1 0.7192 2.4570 -2.7332 25 1 3.0989 -0.4940 1.4489 26 1 1.4294 -0.6180 2.1006 27 1 2.7201 -2.8630 1.2145 28 1 0.9751 -2.6356 0.8679 29 1 1.6359 -4.0139 -1.5167 30 1 0.3137 -2.8872 -1.1203 31 1 2.2488 -2.6013 -4.7226 32 1 1.7232 -4.1790 -4.1062 33 1 4.2576 -3.6335 -4.0349 34 1 3.5157 -4.3246 -2.5799 35 1 4.3600 -1.8070 -0.5135 36 1 3.8537 -3.4895 -0.7556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309106032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -143.324730 kcal Electronic energy + Delta-G solvation = -19444.893782 eV Core-core repulsion = 16508.020173 eV Total energy + Delta-G solvation = -2936.873609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36217 -39.18339 -37.48355 -35.10969 -32.97537 -32.62716 -30.46048 -28.54817 -27.73424 -27.12283 -24.20046 -22.88953 -21.48904 -20.88864 -18.39728 -18.11883 -17.46603 -17.15825 -16.68125 -16.41563 -15.49199 -15.45131 -15.28933 -14.94254 -14.49434 -14.04740 -13.71779 -13.59695 -13.06711 -12.81069 -12.70588 -12.47779 -12.33981 -12.17296 -12.10801 -11.97876 -11.79735 -11.69220 -11.24276 -10.79404 -10.74120 -10.48473 -10.14579 -9.46582 -7.97079 -6.20586 1.40632 1.43279 1.49871 2.45662 2.67537 3.16745 3.21667 3.71618 3.77848 3.84638 4.02425 4.08339 4.17657 4.26742 4.30372 4.50505 4.56793 4.60776 4.70580 4.73685 4.88314 4.94616 5.00077 5.03892 5.04646 5.17413 5.29487 5.36069 5.52147 5.70666 6.21788 6.33584 6.41705 6.64651 6.75841 7.31833 7.55588 9.02796 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.009481 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.136164 B = 2952.629667 C = 3257.505432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 C -0.547 4.547 4 H 0.055 0.945 5 C 0.031 3.969 6 N -0.884 5.884 7 Si 0.947 3.053 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.266 1.266 11 C -0.138 4.138 12 C -0.132 4.132 13 C 0.022 3.978 14 C 0.067 3.933 15 O -0.399 6.399 16 C 0.025 3.975 17 C 0.023 3.977 18 O -0.387 6.387 19 C 0.067 3.933 20 O -0.354 6.354 21 H 0.051 0.949 22 H 0.028 0.972 23 H 0.035 0.965 24 H 0.255 0.745 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -13.853 2.054 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.174 3.826 3 C -0.585 4.585 4 H 0.073 0.927 5 C -0.172 4.172 6 N -0.521 5.521 7 Si 0.773 3.227 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.191 1.191 11 C -0.176 4.176 12 C -0.169 4.169 13 C -0.019 4.019 14 C -0.011 4.011 15 O -0.318 6.318 16 C -0.051 4.051 17 C -0.054 4.054 18 O -0.305 6.305 19 C -0.009 4.009 20 O -0.273 6.273 21 H 0.070 0.930 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.180 -13.423 1.542 13.880 hybrid contribution 0.082 0.870 0.052 0.875 sum 3.262 -12.553 1.594 13.067 Atomic orbital electron populations 1.21943 0.98619 0.97904 1.00690 1.19939 0.90353 0.90152 0.82135 1.21381 1.32506 0.96377 1.08243 0.92681 1.25766 0.94598 1.01827 0.94986 1.70155 1.35463 1.36025 1.10462 0.85816 0.78718 0.80655 0.77551 1.20152 1.21199 1.19066 1.23173 1.00816 0.94727 0.98870 1.23118 1.03197 0.97400 0.93195 1.22864 0.95652 0.87876 0.95514 1.22940 0.99169 0.96513 0.82462 1.87540 1.60993 1.64646 1.18581 1.23958 0.90531 0.98184 0.92470 1.23141 0.95674 0.89202 0.97388 1.87771 1.77662 1.45196 1.19888 1.22002 0.95169 1.01861 0.81841 1.89029 1.84596 1.17917 1.35791 0.92985 0.95335 0.94589 0.93623 0.92320 0.90684 0.88139 0.89840 0.90645 0.90723 0.90556 0.89704 0.87122 0.90687 0.90365 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 8.63 71.98 0.62 -6.13 16 2 C 0.21 10.87 0.72 -10.89 -0.01 10.86 16 3 C -0.55 -31.53 8.29 25.60 0.21 -31.32 16 4 H 0.05 3.09 7.76 -2.91 -0.02 3.07 16 5 C 0.03 1.80 5.28 84.66 0.45 2.25 16 6 N -0.88 -54.83 11.02 21.45 0.24 -54.59 16 7 Si 0.95 45.92 29.54 68.60 2.03 47.95 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 C -0.14 -5.52 6.00 31.99 0.19 -5.33 16 12 C -0.13 -4.19 5.67 31.97 0.18 -4.01 16 13 C 0.02 0.84 0.85 -11.49 -0.01 0.83 16 14 C 0.07 2.32 5.38 72.51 0.39 2.71 16 15 O -0.40 -16.46 9.81 -114.28 -1.12 -17.58 16 16 C 0.02 0.75 7.14 72.33 0.52 1.27 16 17 C 0.02 0.63 6.13 72.33 0.44 1.07 16 18 O -0.39 -14.58 10.46 -123.34 -1.29 -15.87 16 19 C 0.07 2.28 5.08 70.13 0.36 2.64 16 20 O -0.35 -18.77 9.13 -126.98 -1.16 -19.93 16 21 H 0.05 3.02 6.08 -2.39 -0.01 3.01 16 22 H 0.03 1.26 6.97 -2.38 -0.02 1.25 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 25 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 26 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 27 H 0.10 2.42 7.84 -2.39 -0.02 2.40 16 28 H 0.08 2.43 7.02 -2.39 -0.02 2.41 16 29 H 0.08 1.94 7.11 -2.39 -0.02 1.92 16 30 H 0.07 2.65 7.08 -2.38 -0.02 2.63 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 1.53 6.76 -2.39 -0.02 1.51 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 36 H 0.09 2.24 7.46 -2.39 -0.02 2.22 16 Total: -1.00 -74.23 279.64 3.09 -71.14 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.06 Total: 14.04 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.34 Total: -25.15 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.24 Total: -54.59 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -3.57 Total: -53.38 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.23 3.09 -71.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309106032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.184 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds