Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00041 * 2 1 4 4 H 1.48492 * 109.47283 * 270.00361 * 3 2 1 5 5 H 1.48508 * 109.46997 * 29.99996 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99994 * 3 2 1 7 7 C 1.37879 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99220 * 184.85933 * 7 2 1 9 9 C 1.50696 * 120.00320 * 4.86252 * 7 2 1 10 10 H 1.09000 * 109.48198 * 335.04583 * 9 7 2 11 11 C 1.53077 * 109.48950 * 95.07547 * 9 7 2 12 12 C 1.53166 * 109.21601 * 177.51162 * 11 9 7 13 13 C 1.53191 * 109.04531 * 303.12539 * 12 11 9 14 14 C 1.53109 * 109.09614 * 57.01574 * 13 12 11 15 15 C 1.50989 * 110.45825 * 63.98877 * 14 13 12 16 16 O 1.44162 * 113.00598 * 210.42176 * 15 14 13 17 17 C 1.43600 * 115.81604 * 318.61027 * 16 15 14 18 18 C 1.50997 * 111.52330 * 319.44504 * 17 16 15 19 19 O 1.43394 * 107.97510 * 92.73937 * 18 17 16 20 20 C 1.36961 * 117.67273 * 278.89863 * 19 18 17 21 21 O 1.42910 * 109.48083 * 215.02285 * 9 7 2 22 22 H 0.96993 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.51330 * 297.43424 * 11 9 7 24 24 H 1.09002 * 109.51347 * 57.58936 * 11 9 7 25 25 H 1.09000 * 109.54331 * 183.24821 * 12 11 9 26 26 H 1.09004 * 109.61256 * 63.03464 * 12 11 9 27 27 H 1.08998 * 109.53206 * 297.13639 * 13 12 11 28 28 H 1.08999 * 109.59718 * 176.94121 * 13 12 11 29 29 H 1.09001 * 108.77648 * 331.33603 * 15 14 13 30 30 H 1.09003 * 108.77508 * 89.50919 * 15 14 13 31 31 H 1.09003 * 109.06816 * 198.92036 * 17 16 15 32 32 H 1.09002 * 109.06754 * 79.97388 * 17 16 15 33 33 H 1.09002 * 109.76279 * 333.12473 * 18 17 16 34 34 H 1.08999 * 109.76106 * 212.35864 * 18 17 16 35 35 H 1.09001 * 109.22187 * 300.49313 * 20 19 18 36 36 H 1.08998 * 109.22075 * 181.14438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1956 0.0798 9 6 1.2551 -2.4969 -0.1095 10 1 0.2371 -2.3627 0.2562 11 6 1.2170 -2.9421 -1.5736 12 6 0.5087 -4.2966 -1.6704 13 6 1.2335 -5.3050 -0.7734 14 6 1.2662 -4.7674 0.6599 15 6 -0.1341 -4.6536 1.2130 16 8 -0.2762 -3.5863 2.1716 17 6 0.8040 -3.4370 3.1059 18 6 1.3074 -4.7760 3.5894 19 8 2.3928 -5.1734 2.7407 20 6 2.0817 -5.7454 1.5359 21 8 1.9152 -3.4939 0.6732 22 1 -0.4850 0.8400 0.0004 23 1 0.6742 -2.2042 -2.1645 24 1 2.2349 -3.0356 -1.9523 25 1 0.5293 -4.6460 -2.7027 26 1 -0.5253 -4.1931 -1.3412 27 1 2.2527 -5.4460 -1.1331 28 1 0.7048 -6.2580 -0.7932 29 1 -0.8241 -4.4782 0.3876 30 1 -0.3988 -5.5951 1.6943 31 1 0.4574 -2.8569 3.9612 32 1 1.6217 -2.9025 2.6224 33 1 0.5065 -5.5132 3.5327 34 1 1.6568 -4.6888 4.6181 35 1 1.4949 -6.6478 1.7079 36 1 3.0023 -6.0105 1.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309129168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = -132.324690 kcal Electronic energy + Delta-G solvation = -19612.069134 eV Core-core repulsion = 16675.672523 eV Total energy + Delta-G solvation = -2936.396611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27406 -37.45479 -35.89453 -33.27489 -32.64550 -31.33322 -29.21647 -26.91315 -26.26675 -24.82417 -22.07974 -21.56829 -21.00075 -18.38165 -16.91715 -16.65678 -16.25353 -16.02764 -14.92786 -14.82456 -14.20745 -14.14069 -13.80492 -13.50558 -12.95176 -12.62411 -12.33200 -12.12035 -11.89894 -11.32632 -10.96991 -10.93945 -10.89699 -10.73005 -10.41429 -10.29688 -10.23962 -10.02094 -9.84442 -9.14428 -8.89003 -8.61561 -8.53544 -7.76404 -6.03729 -4.07876 3.31035 3.37471 3.42394 4.04171 4.33077 4.45270 4.83149 5.04867 5.17629 5.23542 5.35034 5.40648 5.55725 5.59252 5.61240 5.76271 5.83676 5.89761 6.02935 6.19938 6.29077 6.30604 6.42345 6.52759 6.62936 6.91209 7.00964 7.07667 7.21075 7.69325 7.83373 7.86960 7.93033 8.30003 8.76852 9.10245 9.57251 11.04151 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.009997 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.062777 B = 2800.095044 C = 3262.652726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.196 3.804 10 H 0.066 0.934 11 C -0.136 4.136 12 C -0.125 4.125 13 C -0.133 4.133 14 C 0.044 3.956 15 C 0.041 3.959 16 O -0.368 6.368 17 C 0.021 3.979 18 C 0.035 3.965 19 O -0.371 6.371 20 C 0.089 3.911 21 O -0.358 6.358 22 H 0.263 0.737 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -10.710 2.489 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.141 3.859 10 H 0.084 0.916 11 C -0.175 4.175 12 C -0.163 4.163 13 C -0.171 4.171 14 C 0.002 3.998 15 C -0.036 4.036 16 O -0.286 6.286 17 C -0.056 4.056 18 C -0.041 4.041 19 O -0.289 6.289 20 C 0.011 3.989 21 O -0.278 6.278 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.119 -10.389 2.657 10.724 hybrid contribution -0.025 0.585 -0.437 0.731 sum 0.094 -9.804 2.220 10.052 Atomic orbital electron populations 1.69953 1.05897 1.26837 1.49585 1.24952 0.94872 0.99247 0.94511 0.86488 0.79894 0.82862 0.78131 1.20602 1.21152 1.19682 1.20890 0.93588 0.89071 1.50643 0.92297 1.20129 0.96295 0.84500 0.84978 0.91582 1.22283 0.98794 0.93912 1.02495 1.21733 0.99432 0.97110 0.98000 1.22014 1.01439 0.98166 0.95489 1.22648 0.92801 0.89480 0.94870 1.22904 0.97707 0.90346 0.92653 1.88259 1.42848 1.52958 1.44572 1.23186 0.92973 0.96645 0.92751 1.23068 0.89885 0.96612 0.94539 1.86525 1.33748 1.80037 1.28581 1.21986 1.00011 0.92346 0.84596 1.88150 1.51846 1.16923 1.70876 0.92771 0.92020 0.93394 0.93143 0.92413 0.91207 0.92387 0.89239 0.94335 0.90006 0.87941 0.92929 0.88353 0.94369 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 12.77 55.43 0.71 -25.13 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.50 -14.34 8.69 -34.44 -0.30 -14.64 16 8 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 9 C 0.20 5.06 2.36 -27.85 -0.07 5.00 16 10 H 0.07 1.88 5.48 -51.93 -0.28 1.60 16 11 C -0.14 -3.12 5.40 -26.61 -0.14 -3.27 16 12 C -0.13 -2.30 5.78 -26.55 -0.15 -2.46 16 13 C -0.13 -2.21 4.83 -26.58 -0.13 -2.33 16 14 C 0.04 0.82 0.63 -90.76 -0.06 0.76 16 15 C 0.04 0.76 4.65 36.15 0.17 0.93 16 16 O -0.37 -7.90 9.52 -53.80 -0.51 -8.41 16 17 C 0.02 0.40 6.27 36.15 0.23 0.63 16 18 C 0.03 0.55 6.48 36.15 0.23 0.78 16 19 O -0.37 -6.57 9.74 -39.68 -0.39 -6.95 16 20 C 0.09 1.44 5.50 37.97 0.21 1.65 16 21 O -0.36 -8.47 6.78 -63.06 -0.43 -8.89 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.06 1.50 8.14 -51.92 -0.42 1.07 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.07 6.32 -51.93 -0.33 0.74 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.69 5.81 -51.93 -0.30 1.39 16 30 H 0.04 0.61 6.63 -51.93 -0.34 0.26 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.10 2.39 5.92 -51.93 -0.31 2.08 16 33 H 0.05 0.75 6.87 -51.93 -0.36 0.40 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.52 7.74 -51.93 -0.40 0.12 16 36 H 0.10 1.45 8.01 -51.93 -0.42 1.03 16 LS Contribution 271.56 15.07 4.09 4.09 Total: -1.00 -30.79 271.56 -6.90 -37.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.24 Total: 2.15 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.11 Total: -11.17 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.71 Total: -25.13 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.33 Total: -24.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.79 -6.90 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309129168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.642 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds