Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00041 * 2 1 4 4 H 1.48492 * 109.47283 * 270.00361 * 3 2 1 5 5 H 1.48508 * 109.46997 * 29.99996 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99994 * 3 2 1 7 7 C 1.37879 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99220 * 184.85933 * 7 2 1 9 9 C 1.50696 * 120.00320 * 4.86252 * 7 2 1 10 10 H 1.09000 * 109.48198 * 335.04583 * 9 7 2 11 11 C 1.53077 * 109.48950 * 95.07547 * 9 7 2 12 12 C 1.53166 * 109.21601 * 177.51162 * 11 9 7 13 13 C 1.53191 * 109.04531 * 303.12539 * 12 11 9 14 14 C 1.53109 * 109.09614 * 57.01574 * 13 12 11 15 15 C 1.50989 * 110.45825 * 63.98877 * 14 13 12 16 16 O 1.44162 * 113.00598 * 210.42176 * 15 14 13 17 17 C 1.43600 * 115.81604 * 318.61027 * 16 15 14 18 18 C 1.50997 * 111.52330 * 319.44504 * 17 16 15 19 19 O 1.43394 * 107.97510 * 92.73937 * 18 17 16 20 20 C 1.36961 * 117.67273 * 278.89863 * 19 18 17 21 21 O 1.42910 * 109.48083 * 215.02285 * 9 7 2 22 22 H 0.96993 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.51330 * 297.43424 * 11 9 7 24 24 H 1.09002 * 109.51347 * 57.58936 * 11 9 7 25 25 H 1.09000 * 109.54331 * 183.24821 * 12 11 9 26 26 H 1.09004 * 109.61256 * 63.03464 * 12 11 9 27 27 H 1.08998 * 109.53206 * 297.13639 * 13 12 11 28 28 H 1.08999 * 109.59718 * 176.94121 * 13 12 11 29 29 H 1.09001 * 108.77648 * 331.33603 * 15 14 13 30 30 H 1.09003 * 108.77508 * 89.50919 * 15 14 13 31 31 H 1.09003 * 109.06816 * 198.92036 * 17 16 15 32 32 H 1.09002 * 109.06754 * 79.97388 * 17 16 15 33 33 H 1.09002 * 109.76279 * 333.12473 * 18 17 16 34 34 H 1.08999 * 109.76106 * 212.35864 * 18 17 16 35 35 H 1.09001 * 109.22187 * 300.49313 * 20 19 18 36 36 H 1.08998 * 109.22075 * 181.14438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1956 0.0798 9 6 1.2551 -2.4969 -0.1095 10 1 0.2371 -2.3627 0.2562 11 6 1.2170 -2.9421 -1.5736 12 6 0.5087 -4.2966 -1.6704 13 6 1.2335 -5.3050 -0.7734 14 6 1.2662 -4.7674 0.6599 15 6 -0.1341 -4.6536 1.2130 16 8 -0.2762 -3.5863 2.1716 17 6 0.8040 -3.4370 3.1059 18 6 1.3074 -4.7760 3.5894 19 8 2.3928 -5.1734 2.7407 20 6 2.0817 -5.7454 1.5359 21 8 1.9152 -3.4939 0.6732 22 1 -0.4850 0.8400 0.0004 23 1 0.6742 -2.2042 -2.1645 24 1 2.2349 -3.0356 -1.9523 25 1 0.5293 -4.6460 -2.7027 26 1 -0.5253 -4.1931 -1.3412 27 1 2.2527 -5.4460 -1.1331 28 1 0.7048 -6.2580 -0.7932 29 1 -0.8241 -4.4782 0.3876 30 1 -0.3988 -5.5951 1.6943 31 1 0.4574 -2.8569 3.9612 32 1 1.6217 -2.9025 2.6224 33 1 0.5065 -5.5132 3.5327 34 1 1.6568 -4.6888 4.6181 35 1 1.4949 -6.6478 1.7079 36 1 3.0023 -6.0105 1.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309129168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = -152.703492 kcal Electronic energy + Delta-G solvation = -19612.952826 eV Core-core repulsion = 16675.672523 eV Total energy + Delta-G solvation = -2937.280303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73452 -38.97452 -37.39362 -35.19566 -34.34560 -33.04485 -30.70023 -28.68899 -27.67521 -26.56017 -23.84763 -22.97198 -22.57937 -19.97771 -18.73748 -18.21875 -17.67936 -17.60315 -16.83007 -16.32940 -15.85723 -15.59149 -15.38745 -15.00846 -14.51957 -14.35890 -13.95827 -13.64394 -13.50341 -12.89201 -12.73963 -12.69345 -12.60075 -12.37899 -12.07084 -11.91845 -11.86473 -11.61520 -11.37159 -10.84781 -10.68639 -10.61201 -10.12039 -9.50122 -8.19388 -6.31102 1.37371 1.38501 1.50119 2.35846 2.77567 2.90909 3.08904 3.47858 3.69798 3.82314 3.95888 4.09529 4.19175 4.19784 4.33964 4.43794 4.45799 4.54689 4.56946 4.76138 4.80208 4.94720 5.03914 5.05773 5.12948 5.26906 5.28038 5.32570 5.40612 5.61592 5.82153 6.22897 6.28093 6.59866 6.82934 7.06580 7.40093 8.88306 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.009997 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.062777 B = 2800.095044 C = 3262.652726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.043 0.957 9 C 0.206 3.794 10 H 0.033 0.967 11 C -0.133 4.133 12 C -0.120 4.120 13 C -0.127 4.127 14 C 0.028 3.972 15 C 0.036 3.964 16 O -0.401 6.401 17 C 0.021 3.979 18 C 0.043 3.957 19 O -0.390 6.390 20 C 0.087 3.913 21 O -0.379 6.379 22 H 0.265 0.735 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -12.756 2.745 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.062 0.938 9 C 0.150 3.850 10 H 0.051 0.949 11 C -0.171 4.171 12 C -0.157 4.157 13 C -0.165 4.165 14 C -0.012 4.012 15 C -0.041 4.041 16 O -0.320 6.320 17 C -0.055 4.055 18 C -0.033 4.033 19 O -0.308 6.308 20 C 0.009 3.991 21 O -0.299 6.299 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.380 -12.456 2.908 12.796 hybrid contribution -0.113 1.174 -0.488 1.277 sum 0.267 -11.281 2.420 11.541 Atomic orbital electron populations 1.70072 1.07256 1.27686 1.50504 1.25731 0.95699 1.02537 0.94003 0.85504 0.78569 0.78674 0.78590 1.19498 1.20349 1.19484 1.21219 0.93127 0.91311 1.51109 0.93831 1.19737 0.94035 0.84707 0.86544 0.94942 1.22104 0.98784 0.96218 1.00040 1.21673 0.98725 0.94918 1.00394 1.22011 1.02089 0.99121 0.93237 1.23106 0.93148 0.87836 0.97154 1.23058 0.97541 0.91094 0.92382 1.88203 1.43684 1.54570 1.45592 1.23163 0.91189 0.98959 0.92225 1.23135 0.90154 0.94614 0.95372 1.86507 1.34888 1.80231 1.29176 1.22176 1.00752 0.92534 0.83636 1.88078 1.52339 1.18770 1.70752 0.92644 0.94662 0.93824 0.90300 0.92854 0.90685 0.88074 0.90279 0.90641 0.89020 0.92684 0.90678 0.85422 0.90379 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 12.77 21.45 0.27 -55.17 16 2 C 0.02 1.16 5.45 84.65 0.46 1.62 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -31.43 8.69 25.60 0.22 -31.21 16 8 H 0.04 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.21 11.00 2.36 29.87 0.07 11.07 16 10 H 0.03 1.95 5.48 -2.39 -0.01 1.94 16 11 C -0.13 -6.22 5.40 30.68 0.17 -6.05 16 12 C -0.12 -4.24 5.78 30.71 0.18 -4.06 16 13 C -0.13 -3.82 4.83 30.69 0.15 -3.67 16 14 C 0.03 1.01 0.63 -10.88 -0.01 1.00 16 15 C 0.04 1.27 4.65 71.33 0.33 1.60 16 16 O -0.40 -17.35 9.52 -131.23 -1.25 -18.60 16 17 C 0.02 0.81 6.27 71.33 0.45 1.26 16 18 C 0.04 1.23 6.48 71.33 0.46 1.70 16 19 O -0.39 -12.88 9.74 -88.77 -0.86 -13.74 16 20 C 0.09 2.52 5.50 72.51 0.40 2.92 16 21 O -0.38 -18.22 6.78 -122.37 -0.83 -19.05 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.05 1.93 6.32 -2.38 -0.02 1.92 16 27 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.93 5.81 -2.39 -0.01 2.91 16 30 H 0.08 2.09 6.63 -2.39 -0.02 2.08 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.05 2.67 5.92 -2.39 -0.01 2.66 16 33 H 0.08 1.85 6.87 -2.39 -0.02 1.83 16 34 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.08 1.68 7.74 -2.39 -0.02 1.67 16 36 H 0.10 2.81 8.01 -2.39 -0.02 2.79 16 Total: -1.00 -70.31 271.56 3.30 -67.01 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.07 Total: 15.84 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 2.88 Total: -23.83 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.27 Total: -55.17 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.94 Total: -51.38 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.31 3.30 -67.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309129168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.692 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds