Wall clock time and date at job start Mon Mar 30 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39550 * 120.04940 * 142.67838 * 3 2 1 5 5 C 1.37922 * 119.75575 * 179.80163 * 4 3 2 6 6 C 1.38252 * 120.10820 * 0.45427 * 5 4 3 7 7 C 1.50700 * 119.73027 * 179.79802 * 6 5 4 8 8 H 1.08994 * 109.47551 * 219.72710 * 7 6 5 9 9 N 1.46900 * 109.47395 * 339.73172 * 7 6 5 10 10 C 1.50702 * 109.46869 * 99.72764 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38622 * 120.54340 * 359.52738 * 6 5 4 19 19 C 1.37974 * 119.93071 * 0.25157 * 18 6 5 20 20 C 1.51345 * 109.83342 * 180.02562 * 19 18 6 21 21 C 1.54351 * 105.15027 * 17.17473 * 20 19 18 22 22 C 1.51396 * 130.31221 * 180.25130 * 18 6 5 23 23 H 1.07998 * 120.11964 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.94232 * 180.25911 * 5 4 3 25 25 H 1.00903 * 111.00086 * 59.99217 * 9 7 6 26 26 H 1.00902 * 111.00206 * 183.95155 * 9 7 6 27 27 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 28 28 H 1.09005 * 110.30332 * 136.09221 * 20 19 18 29 29 H 1.09003 * 110.30438 * 258.25231 * 20 19 18 30 30 H 1.08996 * 110.82927 * 91.91080 * 21 20 19 31 31 H 1.09007 * 110.82761 * 215.28133 * 21 20 19 32 32 H 1.09000 * 110.30197 * 281.74097 * 22 18 6 33 33 H 1.09002 * 110.30359 * 43.89692 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2664 0.9616 -0.7324 5 6 4.6456 0.9591 -0.7248 6 6 5.3335 0.0022 -0.0018 7 6 6.8405 0.0047 -0.0032 8 1 7.2055 -1.0212 -0.0512 9 7 7.3279 0.7530 -1.1695 10 6 7.3428 0.6580 1.2585 11 1 6.6411 1.0335 1.9886 12 6 8.6985 0.7708 1.4838 13 7 9.5530 0.3133 0.5950 14 14 9.3211 1.5738 3.0512 15 1 9.4837 0.5409 4.1057 16 1 10.6305 2.2231 2.7883 17 1 8.3442 2.5957 3.5058 18 6 4.6483 -0.9560 0.7289 19 6 3.2686 -0.9619 0.7335 20 6 2.7628 -2.0958 1.5989 21 6 3.9696 -2.5093 2.4679 22 6 5.1678 -2.0868 1.5912 23 1 2.7289 1.7061 -1.3007 24 1 5.1891 1.7039 -1.2871 25 1 7.0028 1.7079 -1.1482 26 1 8.3345 0.7149 -1.2288 27 1 10.5067 0.3929 0.7533 28 1 1.9423 -1.7534 2.2295 29 1 2.4402 -2.9312 0.9774 30 1 3.9704 -1.9670 3.4134 31 1 3.9724 -3.5857 2.6403 32 1 5.4929 -2.9195 0.9674 33 1 5.9895 -1.7386 2.2169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309252058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:41 Heat of formation + Delta-G solvation = 38.681060 kcal Electronic energy + Delta-G solvation = -16700.744728 eV Core-core repulsion = 14111.365154 eV Total energy + Delta-G solvation = -2589.379575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93795 -36.42155 -35.80981 -34.38856 -31.88889 -30.01552 -28.76908 -26.99031 -26.13994 -23.77205 -21.40296 -20.82956 -19.81263 -17.61754 -16.62548 -15.79207 -15.44274 -14.95011 -14.41724 -13.91850 -13.59285 -13.34966 -12.99917 -12.95901 -12.59059 -12.47369 -12.13685 -11.93449 -11.51533 -11.45482 -11.12286 -11.01465 -10.83025 -10.71947 -10.54510 -10.51465 -10.08935 -9.66749 -8.77272 -8.13455 -8.00909 -7.31883 -6.19288 -4.36155 1.29639 1.81924 2.92479 3.16370 3.24648 3.27086 3.36380 4.20810 4.25347 4.35101 4.71821 4.89737 5.04050 5.25256 5.33428 5.57202 5.63323 5.77651 5.95015 5.98033 6.03340 6.13080 6.30175 6.42798 6.45368 6.51064 6.66420 6.78164 6.93651 7.03405 7.38431 7.59755 7.64835 7.75589 7.96197 8.55702 8.81561 8.99382 9.35951 10.78510 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.007184 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.283331 B = 3896.525167 C = 4340.154418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.272 3.728 3 C -0.058 4.058 4 C -0.074 4.074 5 C -0.117 4.117 6 C 0.017 3.983 7 C 0.236 3.764 8 H 0.055 0.945 9 N -0.852 5.852 10 C -0.542 4.542 11 H 0.057 0.943 12 C 0.069 3.931 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.094 4.094 19 C -0.057 4.057 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.079 4.079 23 H 0.124 0.876 24 H 0.136 0.864 25 H 0.313 0.687 26 H 0.357 0.643 27 H 0.267 0.733 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 -2.548 0.642 6.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.041 4.041 3 C -0.062 4.062 4 C -0.094 4.094 5 C -0.135 4.135 6 C 0.016 3.984 7 C 0.126 3.874 8 H 0.072 0.928 9 N -0.382 5.382 10 C -0.582 4.582 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.094 4.094 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.156 4.156 22 C -0.116 4.116 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.174 0.826 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.379 -3.116 0.165 8.941 hybrid contribution 1.363 1.138 1.562 2.365 sum -7.016 -1.977 1.727 7.491 Atomic orbital electron populations 1.81164 1.12280 1.09392 1.10022 1.25950 0.92857 0.92684 0.92651 1.15421 0.83428 1.01058 1.06272 1.20973 0.94555 0.96592 0.97305 1.20870 0.92385 0.99898 1.00337 1.20392 0.98503 0.90036 0.89470 1.18052 0.84280 0.96203 0.88859 0.92769 1.59580 1.18859 1.16546 1.43261 1.21710 0.91745 1.39506 1.05248 0.92446 1.24996 0.96753 0.94862 0.96816 1.69736 1.02587 1.45850 1.34828 0.86523 0.78221 0.79635 0.83263 1.20458 1.21132 1.19831 1.20234 0.92345 0.97564 0.99268 1.20442 0.94370 0.94778 0.96329 1.21084 0.98535 0.95611 0.96815 1.22300 0.94049 1.00942 0.98353 1.21000 0.98344 0.95410 0.96853 0.85825 0.84657 0.87758 0.82630 0.92342 0.91261 0.90286 0.91034 0.90863 0.90576 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.74 18.54 41.84 0.78 -6.97 16 2 C 0.27 4.34 15.05 -22.47 -0.34 4.01 16 3 C -0.06 -0.92 5.73 -106.89 -0.61 -1.53 16 4 C -0.07 -1.13 9.75 -39.21 -0.38 -1.51 16 5 C -0.12 -2.01 9.23 -39.69 -0.37 -2.38 16 6 C 0.02 0.34 5.04 -104.48 -0.53 -0.19 16 7 C 0.24 5.30 2.70 -70.02 -0.19 5.11 16 8 H 0.05 1.35 7.98 -51.93 -0.41 0.93 16 9 N -0.85 -18.40 8.67 -6.65 -0.06 -18.46 16 10 C -0.54 -13.28 8.70 -34.44 -0.30 -13.58 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 12 C 0.07 1.71 5.38 -17.82 -0.10 1.62 16 13 N -0.89 -22.91 11.55 55.43 0.64 -22.27 16 14 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C -0.09 -1.66 5.99 -104.24 -0.62 -2.28 16 19 C -0.06 -0.90 6.03 -103.81 -0.63 -1.53 16 20 C -0.08 -1.11 6.43 -26.86 -0.17 -1.28 16 21 C -0.12 -1.52 7.08 -25.31 -0.18 -1.70 16 22 C -0.08 -1.25 6.30 -26.83 -0.17 -1.42 16 23 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.14 2.22 6.21 -52.49 -0.33 1.90 16 25 H 0.31 6.33 7.25 -39.29 -0.28 6.05 16 26 H 0.36 8.40 7.09 -39.29 -0.28 8.12 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -25.75 284.53 -7.76 -33.51 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.80 Total: 11.83 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -4.58 Total: -16.66 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 1.36 Total: -47.70 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -25.75 -7.76 -33.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309252058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.192 kcal (2) G-P(sol) polarization free energy of solvation -25.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds