Wall clock time and date at job start Mon Mar 30 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39550 * 120.04940 * 142.67838 * 3 2 1 5 5 C 1.37922 * 119.75575 * 179.80163 * 4 3 2 6 6 C 1.38252 * 120.10820 * 0.45427 * 5 4 3 7 7 C 1.50700 * 119.73027 * 179.79802 * 6 5 4 8 8 H 1.08994 * 109.47551 * 219.72710 * 7 6 5 9 9 N 1.46900 * 109.47395 * 339.73172 * 7 6 5 10 10 C 1.50702 * 109.46869 * 99.72764 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38622 * 120.54340 * 359.52738 * 6 5 4 19 19 C 1.37974 * 119.93071 * 0.25157 * 18 6 5 20 20 C 1.51345 * 109.83342 * 180.02562 * 19 18 6 21 21 C 1.54351 * 105.15027 * 17.17473 * 20 19 18 22 22 C 1.51396 * 130.31221 * 180.25130 * 18 6 5 23 23 H 1.07998 * 120.11964 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.94232 * 180.25911 * 5 4 3 25 25 H 1.00903 * 111.00086 * 59.99217 * 9 7 6 26 26 H 1.00902 * 111.00206 * 183.95155 * 9 7 6 27 27 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 28 28 H 1.09005 * 110.30332 * 136.09221 * 20 19 18 29 29 H 1.09003 * 110.30438 * 258.25231 * 20 19 18 30 30 H 1.08996 * 110.82927 * 91.91080 * 21 20 19 31 31 H 1.09007 * 110.82761 * 215.28133 * 21 20 19 32 32 H 1.09000 * 110.30197 * 281.74097 * 22 18 6 33 33 H 1.09002 * 110.30359 * 43.89692 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2664 0.9616 -0.7324 5 6 4.6456 0.9591 -0.7248 6 6 5.3335 0.0022 -0.0018 7 6 6.8405 0.0047 -0.0032 8 1 7.2055 -1.0212 -0.0512 9 7 7.3279 0.7530 -1.1695 10 6 7.3428 0.6580 1.2585 11 1 6.6411 1.0335 1.9886 12 6 8.6985 0.7708 1.4838 13 7 9.5530 0.3133 0.5950 14 14 9.3211 1.5738 3.0512 15 1 9.4837 0.5409 4.1057 16 1 10.6305 2.2231 2.7883 17 1 8.3442 2.5957 3.5058 18 6 4.6483 -0.9560 0.7289 19 6 3.2686 -0.9619 0.7335 20 6 2.7628 -2.0958 1.5989 21 6 3.9696 -2.5093 2.4679 22 6 5.1678 -2.0868 1.5912 23 1 2.7289 1.7061 -1.3007 24 1 5.1891 1.7039 -1.2871 25 1 7.0028 1.7079 -1.1482 26 1 8.3345 0.7149 -1.2288 27 1 10.5067 0.3929 0.7533 28 1 1.9423 -1.7534 2.2295 29 1 2.4402 -2.9312 0.9774 30 1 3.9704 -1.9670 3.4134 31 1 3.9724 -3.5857 2.6403 32 1 5.4929 -2.9195 0.9674 33 1 5.9895 -1.7386 2.2169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309252058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:41 Heat of formation + Delta-G solvation = 25.325180 kcal Electronic energy + Delta-G solvation = -16701.323883 eV Core-core repulsion = 14111.365154 eV Total energy + Delta-G solvation = -2589.958729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23354 -37.75660 -37.23047 -35.88694 -33.62284 -31.53929 -30.00892 -28.23121 -27.93212 -25.33237 -22.75859 -22.07617 -21.21822 -18.91573 -18.50734 -17.32623 -16.75728 -16.35429 -16.02085 -15.20770 -14.91055 -14.76458 -14.71768 -14.23738 -14.08410 -13.66055 -13.50857 -13.38190 -13.11087 -12.88248 -12.78111 -12.48497 -12.37191 -11.98241 -11.97570 -11.84121 -11.60524 -11.31417 -10.67408 -9.46685 -9.39226 -9.11941 -8.08258 -6.32555 -0.03434 0.52626 1.39684 1.43680 1.51436 1.64916 2.03104 2.40601 2.95237 2.99989 3.10149 3.54287 3.73213 4.14624 4.23391 4.29421 4.34652 4.51387 4.67271 4.77612 4.88091 4.93644 4.99484 5.12877 5.22423 5.24251 5.38574 5.47775 5.49115 5.55816 5.69528 5.96514 6.03604 6.14014 6.48161 6.69275 6.97074 7.16148 7.43214 8.85937 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.007184 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.283331 B = 3896.525167 C = 4340.154418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.289 3.711 3 C -0.056 4.056 4 C -0.062 4.062 5 C -0.123 4.123 6 C -0.011 4.011 7 C 0.243 3.757 8 H 0.020 0.980 9 N -0.844 5.844 10 C -0.547 4.547 11 H 0.047 0.953 12 C 0.028 3.972 13 N -0.914 5.914 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.112 4.112 19 C -0.054 4.054 20 C -0.082 4.082 21 C -0.109 4.109 22 C -0.082 4.082 23 H 0.155 0.845 24 H 0.140 0.860 25 H 0.320 0.680 26 H 0.346 0.654 27 H 0.267 0.733 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -2.541 1.149 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.024 4.024 3 C -0.060 4.060 4 C -0.082 4.082 5 C -0.142 4.142 6 C -0.012 4.012 7 C 0.132 3.868 8 H 0.038 0.962 9 N -0.373 5.373 10 C -0.587 4.587 11 H 0.065 0.935 12 C -0.173 4.173 13 N -0.553 5.553 14 Si 0.777 3.223 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.112 4.112 19 C -0.057 4.057 20 C -0.118 4.118 21 C -0.146 4.146 22 C -0.119 4.119 23 H 0.172 0.828 24 H 0.157 0.843 25 H 0.131 0.869 26 H 0.160 0.840 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.018 -3.105 0.673 10.510 hybrid contribution 1.827 1.127 1.371 2.547 sum -8.191 -1.979 2.044 8.671 Atomic orbital electron populations 1.81198 1.12705 1.09942 1.10558 1.25752 0.92486 0.92123 0.92088 1.15513 0.83404 1.01004 1.06038 1.21213 0.93690 0.96703 0.96622 1.20931 0.93378 0.99597 1.00263 1.20278 0.96810 0.92266 0.91883 1.17801 0.86612 0.94123 0.88225 0.96221 1.59546 1.17856 1.17061 1.42878 1.21887 0.91732 1.39238 1.05833 0.93482 1.25616 0.97041 0.95464 0.99154 1.69829 1.02652 1.46773 1.36059 0.85669 0.77542 0.78712 0.80366 1.20296 1.20964 1.19845 1.20457 0.93388 0.97854 0.99531 1.20749 0.93599 0.95264 0.96046 1.21175 0.98814 0.95091 0.96748 1.22294 0.92006 1.02689 0.97587 1.21031 0.98945 0.95039 0.96862 0.82770 0.84263 0.86885 0.83960 0.92394 0.90106 0.88537 0.90811 0.88123 0.90303 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.76 18.54 19.00 0.35 -14.41 16 2 C 0.29 8.40 15.05 88.33 1.33 9.73 16 3 C -0.06 -1.63 5.73 -21.33 -0.12 -1.75 16 4 C -0.06 -1.75 9.75 22.51 0.22 -1.54 16 5 C -0.12 -4.15 9.23 22.20 0.20 -3.95 16 6 C -0.01 -0.43 5.04 -19.77 -0.10 -0.53 16 7 C 0.24 11.21 2.70 43.42 0.12 11.32 16 8 H 0.02 1.04 7.98 -2.39 -0.02 1.02 16 9 N -0.84 -37.21 8.67 -174.96 -1.52 -38.72 16 10 C -0.55 -27.37 8.70 25.60 0.22 -27.14 16 11 H 0.05 2.40 7.74 -2.91 -0.02 2.38 16 12 C 0.03 1.40 5.38 84.66 0.46 1.86 16 13 N -0.91 -47.87 11.55 21.45 0.25 -47.62 16 14 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 15 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 C -0.11 -3.92 5.99 -19.61 -0.12 -4.03 16 19 C -0.05 -1.62 6.03 -19.34 -0.12 -1.74 16 20 C -0.08 -1.93 6.43 30.51 0.20 -1.73 16 21 C -0.11 -2.53 7.08 31.52 0.22 -2.30 16 22 C -0.08 -2.57 6.30 30.53 0.19 -2.38 16 23 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 24 H 0.14 4.47 6.21 -2.91 -0.02 4.45 16 25 H 0.32 13.11 7.25 -89.69 -0.65 12.46 16 26 H 0.35 16.67 7.09 -89.69 -0.64 16.04 16 27 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -54.92 284.53 3.68 -51.24 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.14 Total: 30.86 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.71 Total: -24.18 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -0.92 Total: -100.75 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -54.92 3.68 -51.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309252058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.560 kcal (2) G-P(sol) polarization free energy of solvation -54.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds