Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39535 * 120.19239 * 104.02341 * 3 2 1 5 5 C 1.38175 * 120.09791 * 180.02562 * 4 3 2 6 6 C 1.38424 * 120.00392 * 0.02562 * 5 4 3 7 7 C 1.38632 * 120.08506 * 359.97438 * 6 5 4 8 8 C 1.37829 * 120.41983 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.10883 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47315 * 220.02421 * 9 8 7 11 11 N 1.46897 * 109.47560 * 340.02862 * 9 8 7 12 12 C 1.50707 * 109.46756 * 100.02916 * 9 8 7 13 13 H 1.07994 * 120.00074 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99618 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00355 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99940 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47008 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47525 * 120.00017 * 16 14 12 19 19 H 1.48505 * 109.47467 * 240.00341 * 16 14 12 20 20 C 1.51424 * 109.69632 * 179.97438 * 6 5 4 21 21 C 1.54327 * 105.18683 * 17.21671 * 20 6 5 22 22 C 1.51398 * 130.26058 * 179.97438 * 5 4 3 23 23 H 1.08000 * 119.94838 * 359.74289 * 4 3 2 24 24 H 1.08007 * 119.78881 * 180.02562 * 7 6 5 25 25 H 1.00904 * 110.99976 * 296.04293 * 11 9 8 26 26 H 1.00905 * 111.00001 * 59.99419 * 11 9 8 27 27 H 0.97000 * 119.99884 * 180.02562 * 15 14 12 28 28 H 1.09001 * 110.29688 * 136.14421 * 20 6 5 29 29 H 1.08998 * 110.29681 * 258.18802 * 20 6 5 30 30 H 1.08997 * 110.81513 * 91.81461 * 21 20 6 31 31 H 1.09002 * 110.81531 * 215.34979 * 21 20 6 32 32 H 1.08994 * 110.30020 * 43.88910 * 22 5 4 33 33 H 1.09006 * 110.38618 * 281.78094 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 0.2932 -1.1701 5 6 4.6513 0.2928 -1.1680 6 6 5.3417 0.0013 -0.0042 7 6 4.6485 -0.2900 1.1606 8 6 3.2703 -0.2925 1.1704 9 6 2.5239 -0.6106 2.4403 10 1 1.6603 -1.2337 2.2079 11 7 3.4121 -1.3294 3.3635 12 6 2.0601 0.6704 3.0846 13 1 2.2838 1.6198 2.6211 14 6 1.3501 0.6302 4.2659 15 7 1.0781 -0.5260 4.8306 16 14 0.7758 2.2179 5.0650 17 1 1.2082 3.3729 4.2378 18 1 -0.7053 2.2113 5.1711 19 1 1.3688 2.3320 6.4217 20 6 6.8319 0.0660 -0.2649 21 6 6.9775 0.8509 -1.5857 22 6 5.6315 0.5721 -2.2875 23 1 2.7318 0.5159 -2.0798 24 1 5.1920 -0.5163 2.0661 25 1 3.6854 -2.2222 2.9808 26 1 4.2210 -0.7722 3.5945 27 1 0.5783 -0.5542 5.6614 28 1 7.3350 0.5931 0.5457 29 1 7.2408 -0.9386 -0.3731 30 1 7.0999 1.9164 -1.3915 31 1 7.8091 0.4654 -2.1757 32 1 5.3149 1.4450 -2.8584 33 1 5.7184 -0.2956 -2.9415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309418474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = 28.832219 kcal Electronic energy + Delta-G solvation = -16626.104832 eV Core-core repulsion = 14036.298179 eV Total energy + Delta-G solvation = -2589.806653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21319 -38.25851 -37.04291 -35.30042 -33.64437 -31.90526 -30.27622 -28.35790 -27.71083 -24.58257 -23.88578 -21.73242 -21.24899 -18.82513 -18.59559 -17.06561 -16.76130 -16.41424 -15.95071 -15.74023 -15.21391 -14.86542 -14.46538 -14.27648 -14.11243 -13.60409 -13.51883 -13.37577 -13.26624 -12.86649 -12.81959 -12.52678 -12.44318 -11.91494 -11.89288 -11.61864 -11.56449 -11.19839 -10.62386 -9.70551 -9.25461 -8.96043 -8.04710 -6.26047 -0.08575 0.48764 1.34835 1.37524 1.47104 1.77674 2.02317 2.40197 2.94056 3.06215 3.19450 3.64669 3.72870 4.01832 4.24787 4.31610 4.32887 4.44290 4.51181 4.73347 4.83056 4.98969 5.01363 5.06282 5.21726 5.23162 5.32555 5.40120 5.50623 5.60021 5.66093 5.70488 5.98973 6.10604 6.57417 6.62684 7.06071 7.23664 7.46506 8.98603 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.007186 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.773052 B = 3895.428050 C = 4281.244383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.283 3.717 3 C -0.060 4.060 4 C -0.054 4.054 5 C -0.123 4.123 6 C -0.063 4.063 7 C -0.127 4.127 8 C -0.047 4.047 9 C 0.259 3.741 10 H 0.004 0.996 11 N -0.819 5.819 12 C -0.537 4.537 13 H 0.045 0.955 14 C 0.037 3.963 15 N -0.878 5.878 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.085 4.085 21 C -0.114 4.114 22 C -0.074 4.074 23 H 0.145 0.855 24 H 0.131 0.869 25 H 0.316 0.684 26 H 0.330 0.670 27 H 0.255 0.745 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.766 1.554 -13.646 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.030 4.030 3 C -0.064 4.064 4 C -0.074 4.074 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.146 4.146 8 C -0.052 4.052 9 C 0.149 3.851 10 H 0.022 0.978 11 N -0.348 5.348 12 C -0.575 4.575 13 H 0.063 0.937 14 C -0.167 4.167 15 N -0.514 5.514 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.111 4.111 23 H 0.163 0.837 24 H 0.148 0.852 25 H 0.128 0.872 26 H 0.144 0.856 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.302 1.463 -12.960 18.629 hybrid contribution -0.095 0.661 0.330 0.745 sum 13.207 2.124 -12.630 18.397 Atomic orbital electron populations 1.81062 1.13475 1.10839 1.09792 1.25964 0.93203 0.92283 0.91591 1.15920 0.83475 1.10755 0.96233 1.20686 0.93780 0.97056 0.95906 1.20789 0.92535 1.01463 0.97522 1.21225 0.98049 0.94659 0.92452 1.20440 0.91898 1.03360 0.98860 1.21408 0.95026 0.93421 0.95334 1.17806 0.90007 0.93022 0.84305 0.97833 1.58841 1.21660 1.05846 1.48406 1.21027 1.36614 0.91601 1.08278 0.93696 1.25626 0.95277 0.98251 0.97554 1.70217 1.37797 1.25376 1.17969 0.85807 0.77691 0.81008 0.78924 1.19401 1.21416 1.19760 1.21241 0.89077 1.02475 0.99332 1.22332 0.97188 1.00720 0.94864 1.21106 0.92094 1.03080 0.94802 0.83708 0.85167 0.87217 0.85604 0.93539 0.89794 0.88352 0.90694 0.87950 0.89556 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.83 18.54 19.00 0.35 -22.48 16 2 C 0.28 12.53 13.82 88.33 1.22 13.75 16 3 C -0.06 -2.29 5.72 -21.39 -0.12 -2.41 16 4 C -0.05 -1.55 9.75 22.57 0.22 -1.33 16 5 C -0.12 -2.95 6.12 -19.61 -0.12 -3.07 16 6 C -0.06 -1.60 6.14 -19.50 -0.12 -1.72 16 7 C -0.13 -4.13 9.24 22.27 0.21 -3.93 16 8 C -0.05 -1.89 5.04 -19.63 -0.10 -1.99 16 9 C 0.26 12.96 2.34 43.43 0.10 13.06 16 10 H 0.00 0.23 7.48 -2.39 -0.02 0.21 16 11 N -0.82 -37.42 8.02 -174.95 -1.40 -38.82 16 12 C -0.54 -30.07 8.48 25.60 0.22 -29.85 16 13 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 14 C 0.04 2.12 5.39 84.65 0.46 2.57 16 15 N -0.88 -52.97 12.77 21.45 0.27 -52.70 16 16 Si 0.94 45.58 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.08 -1.38 6.77 30.53 0.21 -1.18 16 21 C -0.11 -1.39 7.08 31.50 0.22 -1.16 16 22 C -0.07 -1.10 6.77 30.52 0.21 -0.89 16 23 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 24 H 0.13 3.97 6.23 -2.91 -0.02 3.95 16 25 H 0.32 12.67 9.06 -89.69 -0.81 11.85 16 26 H 0.33 13.82 7.29 -89.69 -0.65 13.17 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -69.95 285.86 3.53 -66.42 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.31 Total: 18.12 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 2.60 Total: -18.14 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -0.78 Total: -114.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.95 3.53 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309418474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.250 kcal (2) G-P(sol) polarization free energy of solvation -69.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds