Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36481 * 127.12163 * 2 1 4 4 C 1.50697 * 126.31526 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47466 * 269.71670 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 N 1.30490 * 107.37089 * 179.72355 * 3 2 1 9 9 N 1.28533 * 110.05862 * 0.24081 * 8 3 2 10 10 C 1.31396 * 109.79789 * 0.02562 * 9 8 3 11 11 S 1.76204 * 126.49125 * 180.02562 * 10 9 8 12 12 C 1.76198 * 100.00192 * 359.97438 * 11 10 9 13 13 H 1.08001 * 119.99803 * 0.02562 * 12 11 10 14 14 C 1.38663 * 120.00047 * 179.97438 * 12 11 10 15 15 N 1.31640 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00038 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47267 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47100 * 120.00074 * 16 14 12 19 19 H 1.48495 * 109.47551 * 240.00088 * 16 14 12 20 20 H 1.08998 * 109.46901 * 90.00731 * 1 2 3 21 21 H 1.08999 * 109.46932 * 210.00055 * 1 2 3 22 22 H 1.08991 * 109.47285 * 330.00122 * 1 2 3 23 23 H 1.09002 * 109.47120 * 149.71423 * 4 3 2 24 24 H 1.08998 * 109.46862 * 29.72225 * 4 3 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 5 4 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 5 4 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 29 29 H 1.00908 * 110.99847 * 179.97438 * 7 6 5 30 30 H 1.00898 * 110.99877 * 303.95043 * 7 6 5 31 31 H 0.97006 * 119.99556 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2886 1.0882 0.0000 4 6 1.8591 2.5327 -0.0005 5 6 1.7210 3.0232 -1.4431 6 6 1.2855 4.4899 -1.4436 7 7 1.1523 4.9607 -2.8287 8 7 3.5168 0.6473 0.0060 9 7 3.5237 -0.6380 0.0047 10 6 2.2898 -1.0897 -0.0028 11 16 1.7928 -2.7802 -0.0068 12 6 3.3712 -3.5633 0.0012 13 1 4.2706 -2.9654 0.0070 14 6 3.4586 -4.9471 0.0012 15 7 2.3623 -5.6759 -0.0053 16 14 5.1319 -5.7773 0.0089 17 1 6.1976 -4.7431 0.0150 18 1 5.2584 -6.6249 1.2218 19 1 5.2701 -6.6240 -1.2031 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 2.6059 3.1341 0.5178 24 1 0.8999 2.6266 0.5086 25 1 0.9742 2.4219 -1.9615 26 1 2.6803 2.9293 -1.9522 27 1 0.3263 4.5843 -0.9344 28 1 2.0325 5.0910 -0.9254 29 1 0.8649 5.9276 -2.8560 30 1 2.0106 4.8237 -3.3412 31 1 2.4235 -6.6440 -0.0057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315024613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = 55.790397 kcal Electronic energy + Delta-G solvation = -14791.586228 eV Core-core repulsion = 12234.852178 eV Total energy + Delta-G solvation = -2556.734050 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.99333 -36.31936 -34.33693 -32.65382 -32.57965 -29.11195 -27.11462 -25.79104 -25.02673 -21.84552 -21.68916 -20.12266 -17.98263 -16.39873 -16.24530 -15.73977 -15.35288 -15.03068 -14.90084 -14.55449 -13.67604 -13.08995 -13.03380 -12.80151 -12.32184 -12.07719 -11.52626 -11.34704 -11.13525 -11.00741 -10.92024 -10.57465 -10.14310 -9.72689 -9.66108 -9.42298 -8.97347 -8.80717 -8.76758 -6.73024 -6.44028 -4.17521 2.41037 2.54071 3.20138 3.25787 3.35477 3.43396 3.62751 4.04512 4.28383 4.64411 4.80158 4.94017 4.99876 5.06789 5.16417 5.17628 5.29847 5.38340 5.55475 5.60696 5.65849 5.89508 6.17016 6.25992 6.50676 6.80651 6.85075 7.14657 7.44894 7.60676 8.41559 9.08512 9.54126 10.64556 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.046638 B = 0.005061 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.219434 B = 5530.673592 C = 5833.779507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.479 5.479 3 C 0.139 3.861 4 C -0.018 4.018 5 C -0.113 4.113 6 C 0.062 3.938 7 N -0.854 5.854 8 N -0.293 5.293 9 N -0.309 5.309 10 C 0.168 3.832 11 S 0.127 5.873 12 C -0.529 4.529 13 H 0.105 0.895 14 C 0.074 3.926 15 N -0.880 5.880 16 Si 0.931 3.069 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.340 0.660 30 H 0.342 0.658 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 15.510 -1.189 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.177 5.177 3 C -0.131 4.131 4 C -0.058 4.058 5 C -0.152 4.152 6 C -0.068 4.068 7 N -0.383 5.383 8 N -0.133 5.133 9 N -0.154 5.154 10 C -0.203 4.203 11 S 0.358 5.642 12 C -0.678 4.678 13 H 0.123 0.877 14 C -0.134 4.134 15 N -0.515 5.515 16 Si 0.756 3.244 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.094 0.906 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.462 14.229 -1.236 15.676 hybrid contribution 1.384 0.619 0.266 1.539 sum -5.077 14.848 -0.970 15.722 Atomic orbital electron populations 1.21924 0.76414 1.04427 1.03560 1.46146 1.07857 1.05390 1.58263 1.24504 0.87695 0.91314 1.09592 1.19755 1.01789 0.86665 0.97635 1.21551 1.02568 0.95179 0.95946 1.21788 1.00326 0.95277 0.89440 1.58689 1.39399 1.25961 1.14275 1.73876 1.17328 1.04754 1.17345 1.74728 1.16493 1.01263 1.22872 1.28349 0.89318 0.98560 1.04114 1.83361 1.13206 0.80384 1.87218 1.23233 0.92587 0.93650 1.58308 0.87716 1.25062 0.98823 0.95953 0.93598 1.69962 1.27660 1.06633 1.47253 0.85888 0.81645 0.78947 0.77875 1.18855 1.20400 1.20382 0.90589 0.89040 0.89931 0.89104 0.90607 0.91139 0.91289 0.91007 0.95276 0.84767 0.84561 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.91 59.85 0.65 1.71 16 2 N -0.48 -9.03 3.21 -120.87 -0.39 -9.42 16 3 C 0.14 2.55 7.32 -154.10 -1.13 1.43 16 4 C -0.02 -0.22 5.58 -27.89 -0.16 -0.38 16 5 C -0.11 -1.27 5.46 -26.73 -0.15 -1.42 16 6 C 0.06 0.54 6.79 -3.82 -0.03 0.51 16 7 N -0.85 -7.17 9.62 -10.37 -0.10 -7.27 16 8 N -0.29 -6.69 12.18 32.97 0.40 -6.29 16 9 N -0.31 -8.01 11.04 30.72 0.34 -7.67 16 10 C 0.17 4.00 8.06 -88.12 -0.71 3.29 16 11 S 0.13 3.22 21.39 -107.50 -2.30 0.92 16 12 C -0.53 -15.12 9.37 30.89 0.29 -14.84 16 13 H 0.10 3.11 6.93 -52.49 -0.36 2.75 16 14 C 0.07 2.06 5.49 -17.48 -0.10 1.96 16 15 N -0.88 -24.82 13.22 55.48 0.73 -24.09 16 16 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 17 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 22 H 0.08 0.80 7.23 -51.93 -0.38 0.43 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.08 0.74 7.25 -51.93 -0.38 0.36 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.34 2.16 9.08 -39.29 -0.36 1.80 16 30 H 0.34 2.69 8.99 -39.29 -0.35 2.34 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -33.72 285.03 -7.26 -40.98 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -3.91 Total: -0.32 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.32 Total: -7.73 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.99 Total: -54.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.30 Total: 0.92 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.72 -7.26 -40.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315024613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.773 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds