Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36481 * 127.12163 * 2 1 4 4 C 1.50697 * 126.31526 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47466 * 269.71670 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 N 1.30490 * 107.37089 * 179.72355 * 3 2 1 9 9 N 1.28533 * 110.05862 * 0.24081 * 8 3 2 10 10 C 1.31396 * 109.79789 * 0.02562 * 9 8 3 11 11 S 1.76204 * 126.49125 * 180.02562 * 10 9 8 12 12 C 1.76198 * 100.00192 * 359.97438 * 11 10 9 13 13 H 1.08001 * 119.99803 * 0.02562 * 12 11 10 14 14 C 1.38663 * 120.00047 * 179.97438 * 12 11 10 15 15 N 1.31640 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00038 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47267 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47100 * 120.00074 * 16 14 12 19 19 H 1.48495 * 109.47551 * 240.00088 * 16 14 12 20 20 H 1.08998 * 109.46901 * 90.00731 * 1 2 3 21 21 H 1.08999 * 109.46932 * 210.00055 * 1 2 3 22 22 H 1.08991 * 109.47285 * 330.00122 * 1 2 3 23 23 H 1.09002 * 109.47120 * 149.71423 * 4 3 2 24 24 H 1.08998 * 109.46862 * 29.72225 * 4 3 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 5 4 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 5 4 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 29 29 H 1.00908 * 110.99847 * 179.97438 * 7 6 5 30 30 H 1.00898 * 110.99877 * 303.95043 * 7 6 5 31 31 H 0.97006 * 119.99556 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2886 1.0882 0.0000 4 6 1.8591 2.5327 -0.0005 5 6 1.7210 3.0232 -1.4431 6 6 1.2855 4.4899 -1.4436 7 7 1.1523 4.9607 -2.8287 8 7 3.5168 0.6473 0.0060 9 7 3.5237 -0.6380 0.0047 10 6 2.2898 -1.0897 -0.0028 11 16 1.7928 -2.7802 -0.0068 12 6 3.3712 -3.5633 0.0012 13 1 4.2706 -2.9654 0.0070 14 6 3.4586 -4.9471 0.0012 15 7 2.3623 -5.6759 -0.0053 16 14 5.1319 -5.7773 0.0089 17 1 6.1976 -4.7431 0.0150 18 1 5.2584 -6.6249 1.2218 19 1 5.2701 -6.6240 -1.2031 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 2.6059 3.1341 0.5178 24 1 0.8999 2.6266 0.5086 25 1 0.9742 2.4219 -1.9615 26 1 2.6803 2.9293 -1.9522 27 1 0.3263 4.5843 -0.9344 28 1 2.0325 5.0910 -0.9254 29 1 0.8649 5.9276 -2.8560 30 1 2.0106 4.8237 -3.3412 31 1 2.4235 -6.6440 -0.0057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315024613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = 31.391580 kcal Electronic energy + Delta-G solvation = -14792.644241 eV Core-core repulsion = 12234.852178 eV Total energy + Delta-G solvation = -2557.792063 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.64083 -37.18034 -35.79136 -34.72909 -33.65494 -30.52549 -28.39789 -27.80214 -26.17504 -23.55078 -22.56625 -21.51216 -19.92147 -18.00285 -17.30192 -17.07053 -16.94538 -16.59135 -16.04445 -15.70979 -14.99758 -14.50871 -14.28126 -13.85895 -13.42797 -13.25496 -13.12367 -12.99299 -12.93935 -12.43263 -12.23834 -12.01414 -11.82635 -11.49481 -11.43437 -11.00918 -10.79363 -10.57786 -9.58664 -8.69159 -8.52646 -6.30151 0.77119 0.83157 1.36444 1.37513 1.53785 1.90966 1.93260 2.13829 2.87857 3.03679 3.36548 3.72667 3.82288 3.94195 4.25577 4.30077 4.36115 4.44565 4.58108 4.64361 4.76924 4.80795 4.95931 5.14998 5.24238 5.28994 5.46842 6.02705 6.21862 6.24951 6.61033 6.95619 7.84258 8.57158 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.046638 B = 0.005061 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.219434 B = 5530.673592 C = 5833.779507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.472 5.472 3 C 0.170 3.830 4 C -0.016 4.016 5 C -0.105 4.105 6 C 0.069 3.931 7 N -0.865 5.865 8 N -0.341 5.341 9 N -0.354 5.354 10 C 0.148 3.852 11 S 0.115 5.885 12 C -0.560 4.560 13 H 0.082 0.918 14 C 0.033 3.967 15 N -0.904 5.904 16 Si 0.994 3.006 17 H -0.275 1.275 18 H -0.264 1.264 19 H -0.264 1.264 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.128 0.872 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 17.246 -1.003 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.167 5.167 3 C -0.101 4.101 4 C -0.056 4.056 5 C -0.144 4.144 6 C -0.062 4.062 7 N -0.396 5.396 8 N -0.180 5.180 9 N -0.198 5.198 10 C -0.227 4.227 11 S 0.345 5.655 12 C -0.708 4.708 13 H 0.100 0.900 14 C -0.173 4.173 15 N -0.540 5.540 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.188 1.188 19 H -0.189 1.189 20 H 0.112 0.888 21 H 0.107 0.893 22 H 0.146 0.854 23 H 0.122 0.878 24 H 0.133 0.867 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.695 16.000 -1.052 17.786 hybrid contribution 1.666 0.289 0.187 1.701 sum -6.029 16.289 -0.864 17.390 Atomic orbital electron populations 1.22427 0.72914 1.06639 1.05468 1.46481 1.09852 1.03946 1.56449 1.25665 0.86503 0.93440 1.04522 1.20114 1.04050 0.82410 0.99016 1.21441 1.01240 0.97127 0.94613 1.21714 1.01391 0.93171 0.89876 1.58681 1.39630 1.27082 1.14226 1.73790 1.20065 1.03668 1.20516 1.74603 1.18327 1.03071 1.23770 1.28010 0.89974 0.98862 1.05820 1.82932 1.11895 0.81747 1.88880 1.23333 0.93340 0.94523 1.59613 0.90018 1.25895 1.02492 0.96151 0.92789 1.70008 1.29352 1.07252 1.47354 0.84973 0.76832 0.77754 0.78883 1.19920 1.18824 1.18856 0.88804 0.89271 0.85366 0.87794 0.86657 0.92044 0.93478 0.89390 0.94195 0.83346 0.84471 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 10.91 127.77 1.39 2.96 16 2 N -0.47 -17.19 3.21 -536.33 -1.72 -18.91 16 3 C 0.17 5.98 7.32 137.67 1.01 6.99 16 4 C -0.02 -0.33 5.58 29.85 0.17 -0.17 16 5 C -0.10 -2.07 5.46 30.59 0.17 -1.90 16 6 C 0.07 0.95 6.79 86.30 0.59 1.53 16 7 N -0.87 -12.21 9.62 -186.72 -1.80 -14.01 16 8 N -0.34 -15.74 12.18 -49.60 -0.60 -16.35 16 9 N -0.35 -18.92 11.04 -56.71 -0.63 -19.55 16 10 C 0.15 7.16 8.06 179.47 1.45 8.60 16 11 S 0.12 6.00 21.39 -56.49 -1.21 4.79 16 12 C -0.56 -33.12 9.37 67.92 0.64 -32.48 16 13 H 0.08 5.11 6.93 -2.91 -0.02 5.09 16 14 C 0.03 1.85 5.49 84.82 0.47 2.32 16 15 N -0.90 -51.43 13.22 21.62 0.29 -51.14 16 16 Si 0.99 44.80 29.55 68.60 2.03 46.83 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.09 2.19 7.87 -2.39 -0.02 2.18 16 22 H 0.13 1.85 7.23 -2.39 -0.02 1.83 16 23 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.12 1.59 7.25 -2.39 -0.02 1.58 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.35 3.48 9.08 -89.69 -0.81 2.67 16 30 H 0.34 4.75 8.99 -89.70 -0.81 3.94 16 31 H 0.28 14.67 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -76.28 285.03 1.76 -74.51 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -0.46 Total: 5.96 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 5.87 Total: -12.14 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.46 Total: -119.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.21 Total: 4.79 kcal Total: -76.28 1.76 -74.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315024613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.906 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds