Wall clock time and date at job start Mon Mar 30 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86801 * 119.99528 * 2 1 4 4 H 1.48504 * 109.46612 * 179.71952 * 3 2 1 5 5 H 1.48498 * 109.47374 * 299.72178 * 3 2 1 6 6 H 1.48495 * 109.47187 * 59.72568 * 3 2 1 7 7 C 1.39585 * 119.99857 * 179.72128 * 2 1 3 8 8 H 1.08000 * 119.99250 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99376 * 179.97438 * 9 7 2 11 11 O 1.21494 * 120.00188 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99433 * 179.97438 * 10 9 7 13 13 O 1.21440 * 119.99982 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99864 * 179.97438 * 12 10 9 15 15 C 1.46495 * 120.00431 * 179.97438 * 14 12 10 16 16 H 1.09004 * 110.42855 * 36.09096 * 15 14 12 17 17 C 1.54263 * 110.49075 * 273.55083 * 15 14 12 18 18 C 1.53867 * 106.60163 * 217.70976 * 17 15 14 19 19 C 1.54268 * 106.59575 * 359.97438 * 18 17 15 20 20 C 1.54880 * 104.19859 * 23.61233 * 19 18 17 21 21 H 1.09000 * 110.75629 * 80.37152 * 20 19 18 22 22 O 1.42904 * 110.76176 * 203.74353 * 20 19 18 23 23 H 0.97000 * 120.00465 * 0.28213 * 1 2 3 24 24 H 0.96991 * 120.00558 * 359.97438 * 9 7 2 25 25 H 0.97005 * 119.99841 * 359.97438 * 14 12 10 26 26 H 1.09009 * 110.02878 * 336.99569 * 17 15 14 27 27 H 1.09001 * 110.03738 * 98.37120 * 17 15 14 28 28 H 1.08995 * 110.03862 * 119.28125 * 18 17 15 29 29 H 1.08997 * 110.03605 * 240.71509 * 18 17 15 30 30 H 1.09004 * 110.48468 * 142.29117 * 19 18 17 31 31 H 1.08999 * 110.48841 * 264.92778 * 19 18 17 32 32 H 0.96698 * 113.99233 * 293.33003 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3465 0.0069 5 1 1.8904 2.3936 -1.2158 6 1 1.8802 2.3994 1.2091 7 6 2.0081 -1.2088 0.0059 8 1 3.0881 -1.2087 0.0063 9 7 1.3275 -2.3876 0.0111 10 6 2.0015 -3.5548 0.0162 11 8 3.2164 -3.5548 0.0167 12 6 1.2573 -4.8437 0.0225 13 8 0.0429 -4.8437 0.0225 14 7 1.9312 -6.0109 0.0271 15 6 1.1988 -7.2796 0.0339 16 1 0.2930 -7.1993 -0.5672 17 6 0.8530 -7.6959 1.4785 18 6 1.0093 -9.2252 1.5447 19 6 1.4440 -9.6850 0.1378 20 6 2.0977 -8.4279 -0.4877 21 1 3.1214 -8.3079 -0.1332 22 8 2.0588 -8.4935 -1.9147 23 1 -0.4851 0.8400 -0.0041 24 1 0.3576 -2.3877 0.0111 25 1 2.9012 -6.0109 0.0260 26 1 1.5395 -7.2197 2.1787 27 1 -0.1736 -7.4142 1.7127 28 1 1.7715 -9.4913 2.2769 29 1 0.0583 -9.6866 1.8106 30 1 2.1684 -10.4964 0.2085 31 1 0.5779 -9.9955 -0.4467 32 1 2.6058 -9.1965 -2.2910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323341367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:30 Heat of formation + Delta-G solvation = -133.479812 kcal Electronic energy + Delta-G solvation = -17305.006092 eV Core-core repulsion = 14265.019047 eV Total energy + Delta-G solvation = -3039.987045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83861 -38.51166 -36.99213 -35.31694 -34.35707 -33.16126 -31.36033 -28.06142 -27.55351 -25.65705 -22.87182 -21.06474 -20.28157 -19.40766 -18.31250 -17.56140 -17.07575 -16.06145 -15.43690 -15.03883 -14.63820 -14.57558 -13.97253 -13.84300 -13.56080 -12.91180 -12.76470 -12.43284 -12.42808 -11.82107 -11.74097 -11.36827 -11.19959 -10.79288 -10.54953 -10.47889 -10.39301 -10.33342 -10.09850 -9.71405 -8.71525 -8.24680 -8.20420 -6.65076 -3.97377 2.47462 3.15428 3.17370 3.23936 3.41017 3.96499 4.07475 4.26766 4.42872 4.61756 4.79935 5.08171 5.12384 5.20812 5.28913 5.38724 5.45122 5.48065 5.69107 5.85509 5.98190 6.06365 6.14565 6.23398 6.84160 7.33060 7.52162 7.71723 7.90573 8.35399 8.65758 8.98481 9.34216 9.87365 10.49947 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052400 B = 0.004771 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.226168 B = 5866.941743 C = 6037.134494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.395 3.605 11 O -0.598 6.598 12 C 0.516 3.484 13 O -0.545 6.545 14 N -0.706 5.706 15 C 0.150 3.850 16 H 0.100 0.900 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.153 4.153 20 C 0.090 3.910 21 H 0.071 0.929 22 O -0.556 6.556 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 -15.947 1.219 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.179 3.821 11 O -0.486 6.486 12 C 0.300 3.700 13 O -0.422 6.422 14 N -0.360 5.360 15 C 0.045 3.955 16 H 0.118 0.882 17 C -0.176 4.176 18 C -0.157 4.157 19 C -0.192 4.192 20 C 0.030 3.970 21 H 0.089 0.911 22 O -0.361 6.361 23 H 0.090 0.910 24 H 0.240 0.760 25 H 0.245 0.755 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.718 -15.270 1.304 15.422 hybrid contribution 0.576 0.257 -0.034 0.631 sum 2.294 -15.014 1.270 15.241 Atomic orbital electron populations 1.69496 1.06523 1.29228 1.45477 1.25588 0.95624 1.00461 0.95945 0.85666 0.79864 0.80024 0.78047 1.18723 1.20289 1.20304 1.19932 0.94000 0.81885 1.47787 0.86936 1.41569 1.10498 1.04228 1.57099 1.18961 0.87805 0.84225 0.91062 1.90572 1.12908 1.86644 1.58525 1.20685 0.87527 0.85886 0.75891 1.90681 1.14054 1.88058 1.49423 1.45635 1.10824 1.04286 1.75214 1.21670 0.95927 0.81910 0.96025 0.88172 1.22544 1.03259 0.95323 0.96455 1.22007 1.01737 0.95543 0.96460 1.22975 1.01408 0.97591 0.97195 1.23056 0.98384 0.94516 0.80996 0.91135 1.86598 1.72157 1.58023 1.19326 0.90986 0.75991 0.75522 0.90750 0.90468 0.91447 0.91306 0.91116 0.90327 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.57 13.03 55.53 0.72 -22.85 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.26 29.56 -169.99 -5.02 15.24 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.54 9.67 -15.15 -0.15 -8.69 16 8 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 9 N -0.50 -13.65 5.25 -11.59 -0.06 -13.71 16 10 C 0.40 10.21 7.82 -11.87 -0.09 10.12 16 11 O -0.60 -16.33 16.03 5.37 0.09 -16.25 16 12 C 0.52 11.61 7.86 -11.87 -0.09 11.51 16 13 O -0.55 -13.16 16.18 5.42 0.09 -13.08 16 14 N -0.71 -12.69 5.11 -52.84 -0.27 -12.96 16 15 C 0.15 2.22 2.88 -66.29 -0.19 2.03 16 16 H 0.10 1.71 7.66 -51.93 -0.40 1.31 16 17 C -0.14 -1.72 6.53 -25.62 -0.17 -1.89 16 18 C -0.12 -1.10 6.80 -25.62 -0.17 -1.27 16 19 C -0.15 -1.34 6.55 -25.08 -0.16 -1.50 16 20 C 0.09 1.01 3.86 -24.75 -0.10 0.91 16 21 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 22 O -0.56 -6.61 13.45 -35.23 -0.47 -7.09 16 23 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 24 H 0.40 11.13 7.35 -40.82 -0.30 10.83 16 25 H 0.41 6.93 7.99 -40.82 -0.33 6.60 16 26 H 0.07 0.96 8.04 -51.92 -0.42 0.55 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.38 2.56 9.12 45.56 0.42 2.98 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -32.42 281.75 -4.97 -37.39 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -3.07 Total: 17.12 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -1.22 Total: 11.93 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.39 Total: -49.52 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.30 Total: -36.41 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.42 -4.97 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323341367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.086 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds