Wall clock time and date at job start Mon Mar 30 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86801 * 119.99528 * 2 1 4 4 H 1.48504 * 109.46612 * 179.71952 * 3 2 1 5 5 H 1.48498 * 109.47374 * 299.72178 * 3 2 1 6 6 H 1.48495 * 109.47187 * 59.72568 * 3 2 1 7 7 C 1.39585 * 119.99857 * 179.72128 * 2 1 3 8 8 H 1.08000 * 119.99250 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99376 * 179.97438 * 9 7 2 11 11 O 1.21494 * 120.00188 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99433 * 179.97438 * 10 9 7 13 13 O 1.21440 * 119.99982 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99864 * 179.97438 * 12 10 9 15 15 C 1.46495 * 120.00431 * 179.97438 * 14 12 10 16 16 H 1.09004 * 110.42855 * 36.09096 * 15 14 12 17 17 C 1.54263 * 110.49075 * 273.55083 * 15 14 12 18 18 C 1.53867 * 106.60163 * 217.70976 * 17 15 14 19 19 C 1.54268 * 106.59575 * 359.97438 * 18 17 15 20 20 C 1.54880 * 104.19859 * 23.61233 * 19 18 17 21 21 H 1.09000 * 110.75629 * 80.37152 * 20 19 18 22 22 O 1.42904 * 110.76176 * 203.74353 * 20 19 18 23 23 H 0.97000 * 120.00465 * 0.28213 * 1 2 3 24 24 H 0.96991 * 120.00558 * 359.97438 * 9 7 2 25 25 H 0.97005 * 119.99841 * 359.97438 * 14 12 10 26 26 H 1.09009 * 110.02878 * 336.99569 * 17 15 14 27 27 H 1.09001 * 110.03738 * 98.37120 * 17 15 14 28 28 H 1.08995 * 110.03862 * 119.28125 * 18 17 15 29 29 H 1.08997 * 110.03605 * 240.71509 * 18 17 15 30 30 H 1.09004 * 110.48468 * 142.29117 * 19 18 17 31 31 H 1.08999 * 110.48841 * 264.92778 * 19 18 17 32 32 H 0.96698 * 113.99233 * 293.33003 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3465 0.0069 5 1 1.8904 2.3936 -1.2158 6 1 1.8802 2.3994 1.2091 7 6 2.0081 -1.2088 0.0059 8 1 3.0881 -1.2087 0.0063 9 7 1.3275 -2.3876 0.0111 10 6 2.0015 -3.5548 0.0162 11 8 3.2164 -3.5548 0.0167 12 6 1.2573 -4.8437 0.0225 13 8 0.0429 -4.8437 0.0225 14 7 1.9312 -6.0109 0.0271 15 6 1.1988 -7.2796 0.0339 16 1 0.2930 -7.1993 -0.5672 17 6 0.8530 -7.6959 1.4785 18 6 1.0093 -9.2252 1.5447 19 6 1.4440 -9.6850 0.1378 20 6 2.0977 -8.4279 -0.4877 21 1 3.1214 -8.3079 -0.1332 22 8 2.0588 -8.4935 -1.9147 23 1 -0.4851 0.8400 -0.0041 24 1 0.3576 -2.3877 0.0111 25 1 2.9012 -6.0109 0.0260 26 1 1.5395 -7.2197 2.1787 27 1 -0.1736 -7.4142 1.7127 28 1 1.7715 -9.4913 2.2769 29 1 0.0583 -9.6866 1.8106 30 1 2.1684 -10.4964 0.2085 31 1 0.5779 -9.9955 -0.4467 32 1 2.6058 -9.1965 -2.2910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323341367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:30 Heat of formation + Delta-G solvation = -161.288184 kcal Electronic energy + Delta-G solvation = -17306.211953 eV Core-core repulsion = 14265.019047 eV Total energy + Delta-G solvation = -3041.192906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46917 -39.90888 -38.78755 -36.53441 -36.17578 -34.64046 -33.43721 -29.19693 -28.60068 -27.57125 -24.65893 -22.02753 -21.51347 -21.00871 -20.37653 -18.83003 -18.57150 -17.60855 -17.09079 -16.53559 -16.49199 -15.87838 -15.68860 -15.03075 -14.80686 -14.65776 -14.34146 -13.70351 -13.58776 -13.42801 -12.99506 -12.89108 -12.58595 -12.32624 -12.17819 -12.08216 -11.69102 -11.65086 -11.44120 -10.95838 -10.29952 -10.27477 -10.18382 -8.67392 -6.12636 0.57201 1.40802 1.45730 1.57001 1.79001 2.28695 2.34883 3.10751 3.13606 3.22507 3.51557 3.79022 3.94439 4.00964 4.30109 4.40305 4.45837 4.46230 4.62961 4.98547 5.00286 5.13219 5.14613 5.24013 5.36214 5.41956 5.66427 6.13581 6.36502 6.79494 6.90846 6.99797 7.25593 7.77483 8.48811 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052400 B = 0.004771 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.226168 B = 5866.941743 C = 6037.134494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.510 5.510 10 C 0.389 3.611 11 O -0.616 6.616 12 C 0.519 3.481 13 O -0.567 6.567 14 N -0.686 5.686 15 C 0.135 3.865 16 H 0.073 0.927 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.142 4.142 20 C 0.095 3.905 21 H 0.088 0.912 22 O -0.581 6.581 23 H 0.289 0.711 24 H 0.400 0.600 25 H 0.415 0.585 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -17.091 1.501 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.833 3.167 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.144 5.144 10 C 0.174 3.826 11 O -0.506 6.506 12 C 0.302 3.698 13 O -0.447 6.447 14 N -0.338 5.338 15 C 0.030 3.970 16 H 0.092 0.908 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.180 4.180 20 C 0.036 3.964 21 H 0.106 0.894 22 O -0.390 6.390 23 H 0.100 0.900 24 H 0.235 0.765 25 H 0.252 0.748 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.621 -16.476 1.581 16.758 hybrid contribution 0.287 0.526 -0.149 0.617 sum 2.908 -15.950 1.432 16.276 Atomic orbital electron populations 1.69561 1.07903 1.30827 1.45096 1.26581 0.96509 1.03549 0.94275 0.84611 0.78248 0.75082 0.78765 1.18709 1.19037 1.18964 1.20043 0.93724 0.83033 1.50750 0.88259 1.41669 1.10232 1.04829 1.57671 1.19581 0.87865 0.85192 0.89962 1.90534 1.13736 1.87266 1.59089 1.20127 0.87062 0.86048 0.76565 1.90668 1.14656 1.88295 1.51032 1.45626 1.11185 1.04203 1.72760 1.22046 0.95733 0.81460 0.97714 0.90839 1.22504 1.02131 0.98298 0.94494 1.22007 1.03153 0.92343 0.97484 1.22932 1.01911 0.96973 0.96155 1.23047 0.98529 0.93777 0.81055 0.89425 1.86539 1.73152 1.59571 1.19724 0.90048 0.76518 0.74782 0.91171 0.92019 0.89453 0.90197 0.87903 0.90542 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.92 13.03 21.77 0.28 -48.64 16 2 C 0.00 -0.26 5.51 85.14 0.47 0.21 16 3 Si 1.01 41.19 29.56 68.60 2.03 43.22 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.35 -19.84 9.67 84.35 0.82 -19.03 16 8 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 9 N -0.51 -28.86 5.25 -308.87 -1.62 -30.48 16 10 C 0.39 20.71 7.82 87.08 0.68 21.39 16 11 O -0.62 -34.40 16.03 -3.70 -0.06 -34.46 16 12 C 0.52 23.95 7.86 87.08 0.68 24.63 16 13 O -0.57 -28.27 16.18 -3.53 -0.06 -28.33 16 14 N -0.69 -24.69 5.11 -439.41 -2.24 -26.94 16 15 C 0.13 3.92 2.88 46.06 0.13 4.06 16 16 H 0.07 2.56 7.66 -2.39 -0.02 2.54 16 17 C -0.14 -3.29 6.53 31.31 0.20 -3.08 16 18 C -0.11 -1.72 6.80 31.32 0.21 -1.51 16 19 C -0.14 -1.98 6.55 31.67 0.21 -1.77 16 20 C 0.10 1.92 3.86 31.87 0.12 2.04 16 21 H 0.09 1.49 8.02 -2.39 -0.02 1.47 16 22 O -0.58 -12.73 13.45 -148.98 -2.00 -14.73 16 23 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 24 H 0.40 22.92 7.35 -92.71 -0.68 22.24 16 25 H 0.42 13.89 7.99 -92.70 -0.74 13.15 16 26 H 0.07 1.75 8.04 -2.38 -0.02 1.73 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.40 4.39 9.12 -74.06 -0.68 3.72 16 Total: -1.00 -71.35 281.75 -1.06 -72.41 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.92 Total: 41.02 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 3.53 Total: 26.94 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -3.58 Total: -106.06 kcal Atomic # 8 Polarization: -75.40 SS G_CDS: -2.12 Total: -77.52 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -71.35 -1.06 -72.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323341367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.880 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds