Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 5 5 H 1.48496 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47106 * 179.97438 * 13 11 10 15 15 C 1.46094 * 118.73111 * 269.72860 * 14 13 11 16 16 C 1.53212 * 109.82483 * 161.46875 * 15 14 13 17 17 O 1.43244 * 108.51261 * 49.54342 * 16 15 14 18 18 C 1.42971 * 112.98756 * 291.45691 * 17 16 15 19 19 C 1.33869 * 118.72948 * 89.99873 * 14 13 11 20 20 O 1.21280 * 118.83516 * 1.88443 * 19 14 13 21 21 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 23 23 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 24 24 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 26 26 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 27 27 H 1.08994 * 109.39479 * 281.78865 * 15 14 13 28 28 H 1.09004 * 109.39036 * 41.50383 * 15 14 13 29 29 H 1.09003 * 109.82817 * 289.74824 * 16 15 14 30 30 H 1.08992 * 109.66547 * 169.24434 * 16 15 14 31 31 H 1.09009 * 109.41391 * 289.49892 * 18 17 16 32 32 H 1.08998 * 109.36120 * 169.66809 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 2.0008 -7.2975 0.0005 15 6 1.6544 -7.9085 1.2815 16 6 0.5329 -8.9331 1.0821 17 8 0.8936 -9.7970 -0.0021 18 6 0.8940 -9.1334 -1.2685 19 6 1.6796 -7.8549 -1.1735 20 8 2.0352 -7.3096 -2.1967 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5568 0.8902 24 1 3.1568 -3.4354 0.0009 25 1 3.3606 -5.9709 -0.8889 26 1 3.3594 -5.9711 0.8910 27 1 2.5326 -8.4038 1.6955 28 1 1.3175 -7.1352 1.9719 29 1 -0.3992 -8.4198 0.8461 30 1 0.4069 -9.5206 1.9914 31 1 -0.1319 -8.9074 -1.5594 32 1 1.3481 -9.7829 -2.0167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330980002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = -139.667052 kcal Electronic energy + Delta-G solvation = -17433.929411 eV Core-core repulsion = 14393.674067 eV Total energy + Delta-G solvation = -3040.255344 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.89982 -40.24189 -38.72960 -36.55623 -36.02614 -34.39959 -31.47916 -30.62594 -29.07736 -26.99327 -25.00571 -24.40977 -21.67761 -20.20594 -19.19562 -18.77112 -18.12943 -17.80936 -16.96943 -16.85520 -16.57439 -16.11342 -15.98996 -15.51617 -15.09992 -14.58172 -14.42304 -14.22615 -14.03927 -13.93452 -12.98897 -12.96872 -12.79573 -12.67696 -12.30813 -12.25786 -11.62818 -11.54343 -11.13733 -10.81765 -10.55436 -9.89749 -9.85852 -8.31339 -6.48585 1.27778 1.42339 1.46482 1.54715 1.66250 1.70731 2.32435 2.59895 2.75705 3.03549 3.27619 3.74792 3.91625 4.04032 4.13736 4.19679 4.34487 4.40759 4.48920 4.70883 4.79806 5.02105 5.12579 5.19066 5.44039 5.64186 5.72718 5.81198 6.22234 6.61720 6.79063 6.91227 7.20385 7.41255 8.80760 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.054090 B = 0.004578 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.527927 B = 6114.676416 C = 6200.699348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.268 3.732 10 N -0.704 5.704 11 C 0.479 3.521 12 O -0.597 6.597 13 C 0.098 3.902 14 N -0.589 5.589 15 C 0.076 3.924 16 C 0.042 3.958 17 O -0.372 6.372 18 C 0.060 3.940 19 C 0.479 3.521 20 O -0.587 6.587 21 H 0.269 0.731 22 H -0.021 1.021 23 H -0.009 1.009 24 H 0.410 0.590 25 H 0.116 0.884 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.153 0.847 31 H 0.097 0.903 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -17.570 4.626 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.355 5.355 11 C 0.266 3.734 12 O -0.479 6.479 13 C -0.028 4.028 14 N -0.321 5.321 15 C -0.045 4.045 16 C -0.035 4.035 17 O -0.290 6.290 18 C -0.020 4.020 19 C 0.268 3.732 20 O -0.468 6.468 21 H 0.078 0.922 22 H -0.003 1.003 23 H 0.009 0.991 24 H 0.246 0.754 25 H 0.134 0.866 26 H 0.172 0.828 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.170 0.830 31 H 0.115 0.885 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.145 -17.556 4.156 19.059 hybrid contribution 0.035 1.609 -0.212 1.623 sum 6.179 -15.947 3.944 17.551 Atomic orbital electron populations 1.70130 1.08356 1.28697 1.49878 1.26089 0.95768 1.03992 0.93722 0.85183 0.77894 0.76446 0.79551 1.18867 1.21079 1.18315 1.21600 0.94380 0.90502 1.53108 0.89652 1.18519 0.88678 0.84392 0.93877 1.46165 1.11356 1.05419 1.72547 1.21934 0.90332 0.85426 0.75758 1.90614 1.19285 1.85520 1.52456 1.21466 0.92923 0.80583 1.07830 1.47274 1.56162 1.21226 1.07390 1.22524 1.00908 0.97192 0.83920 1.23245 0.95512 0.92473 0.92254 1.88158 1.90051 1.35821 1.14997 1.22829 1.00504 0.90063 0.88568 1.21745 0.79919 0.88491 0.83017 1.90717 1.55356 1.65375 1.35401 0.92213 1.00260 0.99080 0.75379 0.86629 0.82850 0.87208 0.89504 0.92790 0.82959 0.88532 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.99 42.39 29.54 68.60 2.03 44.41 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.96 5.43 85.63 0.46 15.42 16 10 N -0.70 -30.07 5.55 -466.80 -2.59 -32.66 16 11 C 0.48 19.45 7.89 87.66 0.69 20.14 16 12 O -0.60 -29.88 16.43 -3.02 -0.05 -29.93 16 13 C 0.10 2.72 5.80 85.64 0.50 3.22 16 14 N -0.59 -15.88 2.32 -828.58 -1.92 -17.80 16 15 C 0.08 1.39 6.63 86.53 0.57 1.96 16 16 C 0.04 0.68 6.91 72.05 0.50 1.18 16 17 O -0.37 -7.17 10.85 -148.98 -1.62 -8.79 16 18 C 0.06 1.29 6.98 71.13 0.50 1.79 16 19 C 0.48 14.58 7.58 87.69 0.66 15.25 16 20 O -0.59 -22.87 16.36 -3.03 -0.05 -22.92 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16 25 H 0.12 3.23 7.24 -2.39 -0.02 3.21 16 26 H 0.15 2.72 8.03 -2.39 -0.02 2.70 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.15 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -81.16 282.17 1.03 -80.13 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.36 Total: 14.68 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 4.59 Total: 29.30 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.23 Total: -106.88 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -1.72 Total: -61.64 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -81.16 1.03 -80.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330980002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.541 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds