Wall clock time and date at job start Mon Mar 30 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48499 * 109.47012 * 274.35188 * 3 2 1 5 5 H 1.48498 * 109.47257 * 34.35088 * 3 2 1 6 6 H 1.48500 * 109.47265 * 154.35502 * 3 2 1 7 7 C 1.38816 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 164.33243 * 7 2 1 9 9 N 1.36936 * 120.00113 * 344.33615 * 7 2 1 10 10 C 1.47053 * 121.00296 * 155.75312 * 9 7 2 11 11 C 1.53157 * 109.23137 * 115.50229 * 10 9 7 12 12 N 1.46938 * 109.35191 * 46.43262 * 11 10 9 13 13 C 1.37500 * 124.45331 * 341.37412 * 12 11 10 14 14 C 1.33868 * 110.07059 * 180.43138 * 13 12 11 15 15 C 1.46522 * 107.00903 * 359.73580 * 14 13 12 16 16 C 1.39632 * 133.95090 * 179.97438 * 15 14 13 17 17 C 1.36614 * 119.76975 * 179.85386 * 16 15 14 18 18 C 1.38833 * 120.50782 * 0.02562 * 17 16 15 19 19 C 1.37741 * 120.67922 * 0.02562 * 18 17 16 20 20 C 1.37676 * 126.01113 * 161.23118 * 12 11 10 21 21 C 1.47395 * 121.00169 * 335.73424 * 9 7 2 22 22 H 0.96998 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.51269 * 235.43052 * 10 9 7 24 24 H 1.09003 * 109.50910 * 355.57511 * 10 9 7 25 25 H 1.09005 * 109.49562 * 166.51209 * 11 10 9 26 26 H 1.09004 * 109.49620 * 286.57272 * 11 10 9 27 27 H 1.08005 * 126.49611 * 179.76944 * 14 13 12 28 28 H 1.08006 * 120.11015 * 359.88122 * 16 15 14 29 29 H 1.08004 * 119.74806 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.66311 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.10296 * 180.02562 * 19 18 17 32 32 H 1.09003 * 109.93600 * 104.09142 * 21 9 7 33 33 H 1.09003 * 109.93598 * 342.87028 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4058 2.0995 -1.3960 5 1 1.4968 2.6243 0.7900 6 1 3.5908 1.4153 0.6059 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2197 -0.2520 9 7 1.3637 -2.3659 0.3212 10 6 1.8618 -3.6651 -0.1546 11 6 2.2968 -4.5094 1.0469 12 7 1.2599 -4.4481 2.0861 13 6 0.2834 -3.4824 2.1546 14 6 -0.5007 -3.6966 3.2183 15 6 0.0040 -4.8982 3.8878 16 6 -0.3836 -5.6087 5.0256 17 6 0.3109 -6.7248 5.3977 18 6 1.3998 -7.1581 4.6533 19 6 1.7998 -6.4716 3.5281 20 6 1.1069 -5.3323 3.1302 21 6 0.1477 -2.3541 1.1542 22 1 -0.4850 0.8400 -0.0004 23 1 1.0697 -4.1827 -0.6956 24 1 2.7134 -3.5081 -0.8167 25 1 2.4384 -5.5436 0.7326 26 1 3.2331 -4.1191 1.4460 27 1 -1.3454 -3.0974 3.5246 28 1 -1.2298 -5.2773 5.6093 29 1 0.0111 -7.2738 6.2781 30 1 1.9388 -8.0424 4.9596 31 1 2.6480 -6.8172 2.9558 32 1 -0.7317 -2.5144 0.5303 33 1 0.0648 -1.4015 1.6774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334594409.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:00 Heat of formation + Delta-G solvation = 86.428946 kcal Electronic energy + Delta-G solvation = -16929.429584 eV Core-core repulsion = 14342.120513 eV Total energy + Delta-G solvation = -2587.309071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86409 -37.31157 -35.14519 -32.97889 -31.46330 -29.99394 -29.01485 -27.14182 -25.71037 -23.84370 -21.46705 -21.34621 -20.74763 -18.45951 -17.12014 -16.45289 -15.53524 -15.29090 -14.82993 -14.38015 -13.75421 -13.70190 -13.32599 -13.27103 -12.98131 -12.31637 -12.09150 -11.92186 -11.34738 -11.24815 -11.05727 -10.88196 -10.77878 -10.49477 -10.25257 -10.09467 -10.03801 -9.19731 -8.73418 -7.54519 -7.15213 -6.95212 -5.97707 -3.39262 1.55368 2.03198 3.29465 3.32798 3.35264 3.37857 3.40840 4.31138 4.35632 5.05306 5.14662 5.17734 5.29784 5.35932 5.43878 5.48099 5.70742 5.78974 5.80931 5.94416 6.13899 6.22322 6.33542 6.48062 6.49754 6.51336 6.81543 6.94583 7.01647 7.15618 7.26384 7.44410 7.61661 7.81959 7.93247 8.16981 8.97625 9.59812 10.14051 11.13588 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.040856 B = 0.006323 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.169946 B = 4427.037251 C = 4737.319683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.596 5.596 10 C 0.132 3.868 11 C 0.091 3.909 12 N -0.472 5.472 13 C 0.102 3.898 14 C -0.236 4.236 15 C -0.101 4.101 16 C -0.077 4.077 17 C -0.158 4.158 18 C -0.116 4.116 19 C -0.128 4.128 20 C 0.090 3.910 21 C 0.229 3.771 22 H 0.258 0.742 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -10.346 5.706 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.319 5.319 10 C 0.005 3.995 11 C -0.032 4.032 12 N -0.155 5.155 13 C -0.007 4.007 14 C -0.260 4.260 15 C -0.107 4.107 16 C -0.096 4.096 17 C -0.177 4.177 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.016 4.016 21 C 0.103 3.897 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.601 -10.146 5.397 11.604 hybrid contribution 0.490 0.772 0.025 0.915 sum 2.091 -9.374 5.422 11.029 Atomic orbital electron populations 1.69965 1.05268 1.26093 1.53652 1.25033 0.95442 0.98563 1.00277 0.86186 0.79147 0.83172 0.77710 1.21255 1.21300 1.20364 1.19170 0.92445 0.84102 1.43151 0.91051 1.44138 1.29626 1.01235 1.56855 1.21142 0.98760 0.87483 0.92142 1.22549 0.90056 1.00779 0.89842 1.44195 1.26398 1.22264 1.22668 1.22262 0.88190 0.92188 0.98081 1.21192 1.05292 1.00630 0.98926 1.19250 0.97233 0.97460 0.96731 1.20185 0.99334 0.94813 0.95226 1.20463 0.97895 0.98347 1.01036 1.20617 0.97875 0.99740 0.95302 1.19949 1.00932 0.95046 0.98952 1.18343 0.98369 0.93960 0.90961 1.20019 0.89171 0.92477 0.88038 0.93156 0.94740 0.90336 0.91117 0.91248 0.84033 0.86656 0.86824 0.86590 0.87049 0.92813 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.14 11.08 55.49 0.61 -24.53 16 2 C 0.01 0.15 5.00 -17.43 -0.09 0.07 16 3 Si 0.91 21.03 29.58 -169.99 -5.03 16.00 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.84 9.66 -15.06 -0.15 -6.99 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -14.49 3.00 -172.92 -0.52 -15.01 16 10 C 0.13 2.62 6.47 -3.66 -0.02 2.59 16 11 C 0.09 1.62 7.05 -3.72 -0.03 1.59 16 12 N -0.47 -9.43 3.20 -109.08 -0.35 -9.78 16 13 C 0.10 2.19 6.64 -81.24 -0.54 1.65 16 14 C -0.24 -4.69 10.98 -37.78 -0.41 -5.10 16 15 C -0.10 -1.91 6.37 -105.12 -0.67 -2.58 16 16 C -0.08 -1.22 10.05 -39.65 -0.40 -1.62 16 17 C -0.16 -2.22 9.97 -39.95 -0.40 -2.62 16 18 C -0.12 -1.63 10.01 -39.54 -0.40 -2.02 16 19 C -0.13 -2.03 10.02 -39.42 -0.40 -2.43 16 20 C 0.09 1.70 6.84 -83.98 -0.57 1.13 16 21 C 0.23 5.44 5.31 -4.36 -0.02 5.42 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 28 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.11 2.79 6.44 -51.93 -0.33 2.46 16 LS Contribution 275.99 15.07 4.16 4.16 Total: -1.00 -29.10 275.99 -9.31 -38.42 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.10 Total: 1.65 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -4.09 Total: -10.92 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.25 Total: -49.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.10 -9.31 -38.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334594409.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.845 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds