Wall clock time and date at job start Mon Mar 30 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48499 * 109.47012 * 274.35188 * 3 2 1 5 5 H 1.48498 * 109.47257 * 34.35088 * 3 2 1 6 6 H 1.48500 * 109.47265 * 154.35502 * 3 2 1 7 7 C 1.38816 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 164.33243 * 7 2 1 9 9 N 1.36936 * 120.00113 * 344.33615 * 7 2 1 10 10 C 1.47053 * 121.00296 * 155.75312 * 9 7 2 11 11 C 1.53157 * 109.23137 * 115.50229 * 10 9 7 12 12 N 1.46938 * 109.35191 * 46.43262 * 11 10 9 13 13 C 1.37500 * 124.45331 * 341.37412 * 12 11 10 14 14 C 1.33868 * 110.07059 * 180.43138 * 13 12 11 15 15 C 1.46522 * 107.00903 * 359.73580 * 14 13 12 16 16 C 1.39632 * 133.95090 * 179.97438 * 15 14 13 17 17 C 1.36614 * 119.76975 * 179.85386 * 16 15 14 18 18 C 1.38833 * 120.50782 * 0.02562 * 17 16 15 19 19 C 1.37741 * 120.67922 * 0.02562 * 18 17 16 20 20 C 1.37676 * 126.01113 * 161.23118 * 12 11 10 21 21 C 1.47395 * 121.00169 * 335.73424 * 9 7 2 22 22 H 0.96998 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.51269 * 235.43052 * 10 9 7 24 24 H 1.09003 * 109.50910 * 355.57511 * 10 9 7 25 25 H 1.09005 * 109.49562 * 166.51209 * 11 10 9 26 26 H 1.09004 * 109.49620 * 286.57272 * 11 10 9 27 27 H 1.08005 * 126.49611 * 179.76944 * 14 13 12 28 28 H 1.08006 * 120.11015 * 359.88122 * 16 15 14 29 29 H 1.08004 * 119.74806 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.66311 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.10296 * 180.02562 * 19 18 17 32 32 H 1.09003 * 109.93600 * 104.09142 * 21 9 7 33 33 H 1.09003 * 109.93598 * 342.87028 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4058 2.0995 -1.3960 5 1 1.4968 2.6243 0.7900 6 1 3.5908 1.4153 0.6059 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2197 -0.2520 9 7 1.3637 -2.3659 0.3212 10 6 1.8618 -3.6651 -0.1546 11 6 2.2968 -4.5094 1.0469 12 7 1.2599 -4.4481 2.0861 13 6 0.2834 -3.4824 2.1546 14 6 -0.5007 -3.6966 3.2183 15 6 0.0040 -4.8982 3.8878 16 6 -0.3836 -5.6087 5.0256 17 6 0.3109 -6.7248 5.3977 18 6 1.3998 -7.1581 4.6533 19 6 1.7998 -6.4716 3.5281 20 6 1.1069 -5.3323 3.1302 21 6 0.1477 -2.3541 1.1542 22 1 -0.4850 0.8400 -0.0004 23 1 1.0697 -4.1827 -0.6956 24 1 2.7134 -3.5081 -0.8167 25 1 2.4384 -5.5436 0.7326 26 1 3.2331 -4.1191 1.4460 27 1 -1.3454 -3.0974 3.5246 28 1 -1.2298 -5.2773 5.6093 29 1 0.0111 -7.2738 6.2781 30 1 1.9388 -8.0424 4.9596 31 1 2.6480 -6.8172 2.9558 32 1 -0.7317 -2.5144 0.5303 33 1 0.0648 -1.4015 1.6774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334594409.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:59 Heat of formation + Delta-G solvation = 71.269853 kcal Electronic energy + Delta-G solvation = -16930.086932 eV Core-core repulsion = 14342.120513 eV Total energy + Delta-G solvation = -2587.966419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.26469 -38.73024 -36.75722 -34.55902 -33.21250 -31.37139 -30.50404 -28.70048 -27.36894 -25.53982 -23.00830 -22.66216 -22.17912 -20.00409 -18.88228 -17.93961 -17.04754 -16.77194 -16.39153 -15.85333 -15.41976 -15.26632 -14.80809 -14.70208 -14.53262 -13.73801 -13.56063 -13.41294 -13.14690 -12.74612 -12.67899 -12.51915 -12.41680 -12.02864 -11.93018 -11.72263 -11.61230 -10.75447 -10.46380 -8.98557 -8.89681 -8.46485 -7.99157 -5.43164 0.28838 0.80415 1.45039 1.47664 1.56760 1.82448 1.93773 2.45612 3.07469 3.19967 3.46238 3.82205 3.86504 3.91558 4.19335 4.24055 4.32405 4.39827 4.60047 4.67703 4.74121 4.77856 4.89768 4.99862 5.08051 5.17151 5.24696 5.31186 5.55590 5.63731 5.76640 5.95564 6.06104 6.21783 6.35984 6.53927 6.98558 7.65295 8.18545 9.11231 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.040856 B = 0.006323 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.169946 B = 4427.037251 C = 4737.319683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.047 4.047 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.270 4.270 8 H 0.077 0.923 9 N -0.615 5.615 10 C 0.129 3.871 11 C 0.098 3.902 12 N -0.481 5.481 13 C 0.068 3.932 14 C -0.236 4.236 15 C -0.133 4.133 16 C -0.086 4.086 17 C -0.151 4.151 18 C -0.102 4.102 19 C -0.140 4.140 20 C 0.072 3.928 21 C 0.245 3.755 22 H 0.254 0.746 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.133 0.867 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.028 0.972 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -12.734 7.255 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.399 4.399 8 H 0.095 0.905 9 N -0.338 5.338 10 C 0.003 3.997 11 C -0.025 4.025 12 N -0.165 5.165 13 C -0.041 4.041 14 C -0.261 4.261 15 C -0.138 4.138 16 C -0.104 4.104 17 C -0.170 4.170 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.034 4.034 21 C 0.119 3.881 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.165 0.835 28 H 0.151 0.849 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.045 0.955 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.066 -12.572 6.944 14.685 hybrid contribution 0.034 1.338 -0.350 1.384 sum 3.100 -11.233 6.594 13.389 Atomic orbital electron populations 1.70122 1.06636 1.26369 1.55088 1.25803 0.96176 1.01583 1.00656 0.85192 0.78009 0.79235 0.77572 1.20810 1.21835 1.19593 1.19529 0.92884 0.85188 1.42275 0.90493 1.44366 1.29621 1.02399 1.57412 1.21309 0.99026 0.85848 0.93497 1.22511 0.89341 1.02235 0.88414 1.44255 1.26364 1.22247 1.23605 1.21813 0.90546 0.92981 0.98770 1.21442 1.04910 1.01220 0.98539 1.19502 0.98153 0.97687 0.98417 1.20521 1.00236 0.95226 0.94413 1.20954 0.96991 0.97325 1.01723 1.21164 0.97213 1.00011 0.93733 1.20325 1.01505 0.94197 0.99990 1.18779 0.99095 0.94824 0.90718 1.19474 0.88449 0.92162 0.88016 0.93640 0.94886 0.88921 0.87521 0.91190 0.83471 0.84864 0.83141 0.82664 0.84931 0.95476 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.35 11.08 21.65 0.24 -54.11 16 2 C -0.05 -2.55 5.00 84.86 0.42 -2.13 16 3 Si 0.97 44.13 29.58 68.60 2.03 46.16 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.27 -14.50 9.66 84.03 0.81 -13.69 16 8 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 9 N -0.61 -30.85 3.00 -701.01 -2.10 -32.95 16 10 C 0.13 5.13 6.47 86.33 0.56 5.69 16 11 C 0.10 3.34 7.05 86.35 0.61 3.95 16 12 N -0.48 -19.11 3.20 -499.03 -1.60 -20.70 16 13 C 0.07 3.03 6.64 40.90 0.27 3.30 16 14 C -0.24 -9.67 10.98 23.44 0.26 -9.41 16 15 C -0.13 -4.89 6.37 -20.19 -0.13 -5.02 16 16 C -0.09 -2.49 10.05 22.23 0.22 -2.26 16 17 C -0.15 -3.54 9.97 22.03 0.22 -3.32 16 18 C -0.10 -2.36 10.01 22.29 0.22 -2.13 16 19 C -0.14 -3.94 10.02 22.37 0.22 -3.71 16 20 C 0.07 2.60 6.84 39.04 0.27 2.87 16 21 C 0.25 12.39 5.31 85.69 0.45 12.85 16 22 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 3.33 7.94 -2.39 -0.02 3.31 16 25 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 26 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.15 5.53 8.06 -2.91 -0.02 5.51 16 28 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 4.16 6.44 -2.39 -0.02 4.15 16 Total: -1.00 -64.85 275.99 4.08 -60.76 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.10 Total: 13.86 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.42 Total: -13.02 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.46 Total: -107.76 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.85 4.08 -60.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334594409.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.030 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds