Wall clock time and date at job start Mon Mar 30 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46967 * 90.02896 * 7 6 4 9 9 O 1.42895 * 109.47455 * 64.99356 * 8 7 6 10 10 C 1.42898 * 114.00254 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47392 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00100 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99607 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00080 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47135 * 89.99719 * 15 13 11 17 17 H 1.48497 * 109.47281 * 210.00080 * 15 13 11 18 18 H 1.48509 * 109.46889 * 329.99960 * 15 13 11 19 19 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 20 20 O 1.21539 * 123.77572 * 179.76923 * 19 6 4 21 21 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 22 22 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 23 23 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 24 24 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 25 25 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 26 26 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 27 27 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 28 28 H 1.09001 * 109.47010 * 184.99865 * 8 7 6 29 29 H 1.09010 * 109.46701 * 304.99776 * 8 7 6 30 30 H 1.08995 * 109.47839 * 300.01075 * 10 9 8 31 31 H 1.09006 * 109.46677 * 60.00660 * 10 9 8 32 32 H 0.97003 * 119.99439 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0437 -2.0611 1.4408 9 8 3.9509 -2.7235 2.0803 10 6 4.2057 -3.0862 3.4388 11 6 2.9932 -3.7746 4.0108 12 1 2.1161 -3.9209 3.3980 13 6 3.0039 -4.2177 5.3164 14 7 1.9459 -4.8189 5.8154 15 14 4.5208 -3.9639 6.3765 16 1 4.4200 -2.6605 7.0810 17 1 4.6164 -5.0597 7.3742 18 1 5.7319 -3.9698 5.5171 19 6 2.2689 -1.0787 -0.0046 20 8 1.8623 -2.2241 -0.0093 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 2.1839 1.7796 0.8967 25 1 2.1831 1.7802 -0.8962 26 1 4.3420 -2.6289 -0.5151 27 1 5.5235 -1.2976 -0.5156 28 1 5.9157 -2.7152 1.4414 29 1 5.2778 -1.1430 1.9799 30 1 5.0601 -3.7616 3.4806 31 1 4.4226 -2.1896 4.0196 32 1 1.9535 -5.1309 6.7338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338512946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:05 Heat of formation + Delta-G solvation = -74.925069 kcal Electronic energy + Delta-G solvation = -17778.710676 eV Core-core repulsion = 14741.262756 eV Total energy + Delta-G solvation = -3037.447920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12224 -38.45092 -37.14553 -35.91997 -35.03777 -32.63134 -30.76639 -28.54724 -27.40977 -26.24522 -23.09474 -22.21862 -21.76379 -19.96668 -17.46478 -17.19287 -16.70552 -16.60083 -15.66485 -15.34085 -15.02911 -14.66267 -14.37732 -14.27479 -13.89185 -13.85338 -12.97782 -12.67187 -12.57268 -12.41875 -12.32433 -11.71851 -11.13528 -10.90512 -10.80008 -10.59824 -10.04999 -9.85108 -9.51952 -9.15814 -8.92766 -8.86433 -8.47282 -6.08917 -4.07523 1.71559 2.19724 3.02957 3.24949 3.27812 3.31993 3.33549 4.06359 4.36723 4.50292 4.73214 4.90325 5.06910 5.20881 5.21826 5.32336 5.39663 5.52585 5.60362 5.69962 5.88668 5.94794 6.10980 6.51078 6.57947 6.99042 7.28854 7.41914 7.60944 8.00615 8.34951 8.67774 9.05652 9.50226 11.04208 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.006723 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.478157 B = 4163.846838 C = 4658.062123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.636 5.636 3 C 0.066 3.934 4 C 0.521 3.479 5 O -0.483 6.483 6 N -0.567 5.567 7 C 0.124 3.876 8 C 0.039 3.961 9 O -0.367 6.367 10 C 0.169 3.831 11 C -0.515 4.515 12 H 0.084 0.916 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.699 3.301 20 O -0.510 6.510 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.003 0.997 31 H -0.005 1.005 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 13.194 -12.939 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.377 5.377 3 C -0.061 4.061 4 C 0.309 3.691 5 O -0.354 6.354 6 N -0.313 5.313 7 C 0.003 3.997 8 C -0.040 4.040 9 O -0.286 6.286 10 C 0.094 3.906 11 C -0.553 4.553 12 H 0.102 0.898 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.191 1.191 19 C 0.401 3.599 20 O -0.380 6.380 21 H 0.076 0.924 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.463 12.658 -12.856 18.101 hybrid contribution 1.035 0.224 0.965 1.433 sum 2.498 12.882 -11.891 17.708 Atomic orbital electron populations 1.21466 0.74289 1.04044 1.01924 1.47428 1.06554 1.05170 1.78596 1.22418 0.87039 0.90636 1.05989 1.20880 0.91365 0.82497 0.74356 1.90785 1.30997 1.66416 1.47249 1.46300 1.08473 1.08752 1.67757 1.21775 0.87825 0.92193 0.97867 1.22714 0.91861 0.96839 0.92602 1.88058 1.36024 1.76897 1.27646 1.20607 0.97798 0.93621 0.78588 1.20895 1.00199 1.36875 0.97360 0.89808 1.24767 0.96174 0.94759 0.97271 1.69884 1.28685 1.39381 1.15425 0.86869 0.83916 0.78318 0.80740 1.20029 1.20718 1.19140 1.15799 0.80633 0.85417 0.78094 1.91047 1.76249 1.18379 1.52313 0.92414 0.89638 0.90518 0.86361 0.86523 0.87807 0.87972 0.92354 0.93959 0.97889 0.98709 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.18 11.17 59.85 0.67 1.85 16 2 N -0.64 -8.03 3.42 -187.94 -0.64 -8.67 16 3 C 0.07 0.62 7.66 -4.32 -0.03 0.59 16 4 C 0.52 6.97 8.31 -10.56 -0.09 6.89 16 5 O -0.48 -7.33 17.76 5.60 0.10 -7.23 16 6 N -0.57 -8.82 2.57 -120.73 -0.31 -9.13 16 7 C 0.12 1.86 6.10 -4.04 -0.02 1.83 16 8 C 0.04 0.69 6.28 37.16 0.23 0.93 16 9 O -0.37 -8.93 9.78 -35.23 -0.34 -9.28 16 10 C 0.17 4.46 4.76 36.01 0.17 4.63 16 11 C -0.52 -15.90 9.99 -34.44 -0.34 -16.24 16 12 H 0.08 2.88 8.06 -52.49 -0.42 2.45 16 13 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 15 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 C 0.70 11.96 8.01 -88.02 -0.71 11.26 16 20 O -0.51 -11.04 16.94 5.33 0.09 -10.95 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.57 7.85 -51.93 -0.41 1.17 16 27 H 0.10 1.19 8.00 -51.93 -0.42 0.78 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 31 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 32 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 284.29 15.07 4.28 4.28 Total: -1.00 -37.78 284.29 -5.07 -42.85 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -4.13 Total: -5.45 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -0.22 Total: 13.81 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.18 Total: -45.25 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.15 Total: -27.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -37.78 -5.07 -42.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338512946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds