Wall clock time and date at job start Mon Mar 30 2020 03:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46967 * 90.02896 * 7 6 4 9 9 O 1.42895 * 109.47455 * 64.99356 * 8 7 6 10 10 C 1.42898 * 114.00254 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47392 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00100 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99607 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00080 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47135 * 89.99719 * 15 13 11 17 17 H 1.48497 * 109.47281 * 210.00080 * 15 13 11 18 18 H 1.48509 * 109.46889 * 329.99960 * 15 13 11 19 19 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 20 20 O 1.21539 * 123.77572 * 179.76923 * 19 6 4 21 21 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 22 22 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 23 23 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 24 24 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 25 25 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 26 26 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 27 27 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 28 28 H 1.09001 * 109.47010 * 184.99865 * 8 7 6 29 29 H 1.09010 * 109.46701 * 304.99776 * 8 7 6 30 30 H 1.08995 * 109.47839 * 300.01075 * 10 9 8 31 31 H 1.09006 * 109.46677 * 60.00660 * 10 9 8 32 32 H 0.97003 * 119.99439 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0437 -2.0611 1.4408 9 8 3.9509 -2.7235 2.0803 10 6 4.2057 -3.0862 3.4388 11 6 2.9932 -3.7746 4.0108 12 1 2.1161 -3.9209 3.3980 13 6 3.0039 -4.2177 5.3164 14 7 1.9459 -4.8189 5.8154 15 14 4.5208 -3.9639 6.3765 16 1 4.4200 -2.6605 7.0810 17 1 4.6164 -5.0597 7.3742 18 1 5.7319 -3.9698 5.5171 19 6 2.2689 -1.0787 -0.0046 20 8 1.8623 -2.2241 -0.0093 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 2.1839 1.7796 0.8967 25 1 2.1831 1.7802 -0.8962 26 1 4.3420 -2.6289 -0.5151 27 1 5.5235 -1.2976 -0.5156 28 1 5.9157 -2.7152 1.4414 29 1 5.2778 -1.1430 1.9799 30 1 5.0601 -3.7616 3.4806 31 1 4.4226 -2.1896 4.0196 32 1 1.9535 -5.1309 6.7338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338512946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:04 Heat of formation + Delta-G solvation = -104.726328 kcal Electronic energy + Delta-G solvation = -17780.002956 eV Core-core repulsion = 14741.262756 eV Total energy + Delta-G solvation = -3038.740200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.24392 -39.62930 -38.84409 -37.17608 -36.28173 -34.87602 -32.06916 -30.13352 -28.92510 -27.27382 -24.41289 -24.01121 -23.21985 -21.11966 -19.15356 -18.59457 -18.11911 -17.78768 -17.35955 -16.76828 -16.50294 -16.13289 -15.77468 -15.44744 -15.16964 -14.99445 -14.72599 -14.29662 -13.88994 -13.44668 -13.36111 -13.22130 -12.86585 -12.78626 -12.58477 -11.88882 -11.85896 -11.42265 -11.26512 -10.97345 -10.82033 -10.44390 -9.90117 -8.40608 -6.49226 0.65159 1.12890 1.29073 1.32992 1.44095 2.03229 2.12291 2.25799 2.91000 2.97715 3.09360 3.78140 4.00036 4.05955 4.26979 4.29698 4.35627 4.39137 4.45643 4.61763 4.68824 4.76702 4.90319 4.93302 5.06073 5.38363 5.48997 5.88673 6.16255 6.37147 6.54950 6.68598 7.12890 7.14830 8.77123 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.006723 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.478157 B = 4163.846838 C = 4658.062123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.630 5.630 3 C 0.074 3.926 4 C 0.519 3.481 5 O -0.501 6.501 6 N -0.577 5.577 7 C 0.124 3.876 8 C 0.030 3.970 9 O -0.397 6.397 10 C 0.181 3.819 11 C -0.546 4.546 12 H 0.022 0.978 13 C 0.013 3.987 14 N -0.942 5.942 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.245 1.245 19 C 0.686 3.314 20 O -0.575 6.575 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.115 0.885 24 H 0.147 0.853 25 H 0.164 0.836 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.007 0.993 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 15.708 -12.777 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.370 5.370 3 C -0.050 4.050 4 C 0.309 3.691 5 O -0.374 6.374 6 N -0.322 5.322 7 C 0.003 3.997 8 C -0.047 4.047 9 O -0.317 6.317 10 C 0.105 3.895 11 C -0.583 4.583 12 H 0.040 0.960 13 C -0.185 4.185 14 N -0.581 5.581 15 Si 0.779 3.221 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.169 1.169 19 C 0.388 3.612 20 O -0.450 6.450 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.164 0.836 25 H 0.182 0.818 26 H 0.112 0.888 27 H 0.158 0.842 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.306 15.241 -12.725 20.129 hybrid contribution 0.358 -0.519 0.823 1.037 sum 3.664 14.722 -11.902 19.283 Atomic orbital electron populations 1.21722 0.72682 1.04266 1.03581 1.47689 1.07579 1.04998 1.76745 1.22753 0.83440 0.89390 1.09451 1.21468 0.92754 0.81576 0.73331 1.90780 1.32112 1.66358 1.48100 1.46439 1.08036 1.09909 1.67805 1.21848 0.89168 0.92572 0.96089 1.23068 0.91045 0.96925 0.93695 1.88031 1.39161 1.77791 1.26700 1.20307 0.95616 0.93667 0.79909 1.21115 1.00319 1.38996 0.97897 0.96006 1.25890 1.00499 0.93552 0.98584 1.70049 1.31599 1.40066 1.16388 0.85567 0.78900 0.79133 0.78459 1.18320 1.19473 1.16851 1.16204 0.81535 0.85605 0.77900 1.90998 1.77331 1.21092 1.55528 0.90077 0.92967 0.86670 0.83567 0.81848 0.88822 0.84221 0.90010 0.93468 0.96677 0.97551 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.09 11.17 127.77 1.43 3.52 16 2 N -0.63 -15.00 3.42 -866.95 -2.96 -17.96 16 3 C 0.07 1.14 7.66 85.76 0.66 1.80 16 4 C 0.52 12.69 8.31 87.94 0.73 13.42 16 5 O -0.50 -13.92 17.76 -2.89 -0.05 -13.97 16 6 N -0.58 -17.54 2.57 -773.13 -1.99 -19.52 16 7 C 0.12 3.64 6.10 86.38 0.53 4.16 16 8 C 0.03 1.06 6.28 71.98 0.45 1.52 16 9 O -0.40 -19.74 9.78 -148.98 -1.46 -21.19 16 10 C 0.18 9.55 4.76 71.24 0.34 9.89 16 11 C -0.55 -35.06 9.99 25.60 0.26 -34.80 16 12 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 13 C 0.01 0.77 5.47 84.66 0.46 1.24 16 14 N -0.94 -61.07 13.96 21.45 0.30 -60.77 16 15 Si 0.96 44.52 27.47 68.60 1.88 46.40 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.25 -10.48 6.54 99.48 0.65 -9.82 16 19 C 0.69 23.85 8.01 179.44 1.44 25.29 16 20 O -0.57 -26.50 16.94 -3.84 -0.07 -26.56 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.05 1.30 8.04 -2.38 -0.02 1.28 16 23 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 2.92 7.85 -2.39 -0.02 2.90 16 27 H 0.14 2.97 8.00 -2.39 -0.02 2.95 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 31 H 0.01 0.34 7.57 -2.38 -0.02 0.32 16 32 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -88.09 284.29 3.01 -85.08 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.06 Total: 2.46 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.29 Total: 26.04 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.65 Total: -98.25 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -1.57 Total: -61.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -88.09 3.01 -85.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338512946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.648 kcal (2) G-P(sol) polarization free energy of solvation -88.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds