Wall clock time and date at job start Mon Mar 30 2020 03:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 110.28735 * 2 1 4 4 C 1.54366 * 110.31943 * 122.12560 * 2 1 3 5 5 C 1.54476 * 103.04572 * 136.71735 * 4 2 1 6 6 H 1.08999 * 110.40594 * 119.27460 * 5 4 2 7 7 N 1.46903 * 110.40464 * 241.58356 * 5 4 2 8 8 C 1.46893 * 110.99924 * 204.99560 * 7 5 4 9 9 C 1.50706 * 109.47176 * 179.97438 * 8 7 5 10 10 O 1.21295 * 119.99584 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99943 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00099 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00243 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00270 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00343 * 16 14 12 20 20 C 1.51513 * 104.62726 * 0.36948 * 5 4 2 21 21 O 1.20827 * 125.94209 * 159.59963 * 20 5 4 22 22 O 1.34563 * 108.10967 * 339.62040 * 20 5 4 23 23 H 1.09000 * 109.47492 * 297.87720 * 1 2 3 24 24 H 1.09004 * 109.47030 * 57.87617 * 1 2 3 25 25 H 1.09005 * 109.47791 * 177.87444 * 1 2 3 26 26 H 1.08999 * 110.70443 * 18.32730 * 4 2 1 27 27 H 1.09000 * 110.85097 * 255.17233 * 4 2 1 28 28 H 1.00904 * 110.99923 * 81.04642 * 7 5 4 29 29 H 1.09001 * 109.46739 * 60.00281 * 8 7 5 30 30 H 1.09000 * 109.47767 * 300.00540 * 8 7 5 31 31 H 0.96994 * 119.99756 * 0.02562 * 11 9 8 32 32 H 0.96999 * 120.00288 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0660 -0.7698 1.2260 5 6 3.2144 -1.6152 0.6320 6 1 4.1619 -1.3533 1.1030 7 7 2.9373 -3.0477 0.8030 8 6 4.1823 -3.8272 0.8126 9 6 3.8588 -5.2884 0.9901 10 8 2.7045 -5.6452 1.0975 11 7 4.8520 -6.1985 1.0295 12 6 4.5576 -7.5278 1.1904 13 1 3.5298 -7.8457 1.2852 14 6 5.5815 -8.4662 1.2305 15 7 6.8321 -8.0796 1.1147 16 14 5.1805 -10.2774 1.4505 17 1 3.7093 -10.4492 1.5567 18 1 5.6846 -11.0415 0.2812 19 1 5.8288 -10.7812 2.6879 20 6 3.2350 -1.2530 -0.8390 21 8 4.1654 -1.4067 -1.5943 22 8 2.0368 -0.7300 -1.1578 23 1 -0.3634 0.4805 0.9084 24 1 -0.3633 0.5465 -0.8704 25 1 -0.3635 -1.0270 -0.0381 26 1 1.2922 -1.4122 1.6461 27 1 2.4452 -0.0812 1.9811 28 1 2.3071 -3.3817 0.0893 29 1 4.8140 -3.4927 1.6356 30 1 4.7086 -3.6832 -0.1310 31 1 5.7751 -5.9130 0.9440 32 1 7.5470 -8.7346 1.1430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380215373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:07 Heat of formation + Delta-G solvation = -141.548851 kcal Electronic energy + Delta-G solvation = -17197.147802 eV Core-core repulsion = 14156.810857 eV Total energy + Delta-G solvation = -3040.336945 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20080 -40.15817 -38.81723 -36.83804 -35.87749 -33.61913 -33.28249 -31.01217 -28.00919 -26.05457 -25.04839 -22.78421 -22.00153 -21.21691 -19.98528 -18.64083 -17.99022 -17.93341 -16.98488 -16.60771 -16.45361 -16.17565 -15.63269 -15.28531 -14.78619 -14.57209 -14.08956 -13.64787 -13.56573 -13.46895 -13.11802 -12.91776 -12.85849 -12.83723 -12.42746 -12.11467 -11.86995 -11.83467 -11.54216 -11.45807 -10.43251 -10.05616 -9.62926 -8.49155 -5.98697 0.67982 1.35843 1.41633 1.56189 1.98555 2.17647 2.28118 2.64666 2.92444 3.17324 3.36690 3.45144 3.81775 3.96858 4.12857 4.20932 4.31259 4.39316 4.48786 4.81562 4.82176 4.98206 5.10591 5.29497 5.38783 5.54733 5.73439 5.93076 5.98277 6.21835 6.54832 7.08502 7.50388 8.04511 8.68493 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049365 B = 0.004529 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.062677 B = 6180.692967 C = 6450.833343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.121 0.879 4 C -0.133 4.133 5 C 0.030 3.970 6 H 0.138 0.862 7 N -0.636 5.636 8 C 0.055 3.945 9 C 0.438 3.562 10 O -0.621 6.621 11 N -0.570 5.570 12 C -0.336 4.336 13 H 0.081 0.919 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.996 3.004 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.269 1.269 20 C 0.451 3.549 21 O -0.491 6.491 22 O -0.371 6.371 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.345 0.655 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.397 0.603 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 17.581 1.741 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 H 0.139 0.861 4 C -0.170 4.170 5 C -0.082 4.082 6 H 0.155 0.845 7 N -0.269 5.269 8 C -0.077 4.077 9 C 0.225 3.775 10 O -0.508 6.508 11 N -0.207 5.207 12 C -0.465 4.465 13 H 0.099 0.901 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.819 3.181 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.194 1.194 20 C 0.291 3.709 21 O -0.375 6.375 22 O -0.289 6.289 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.122 0.878 27 H 0.152 0.848 28 H 0.164 0.836 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.466 17.201 1.938 18.851 hybrid contribution 0.835 -0.984 -1.164 1.738 sum -6.631 16.217 0.774 17.537 Atomic orbital electron populations 1.21970 0.90540 1.03483 1.04676 1.24131 0.97517 0.95716 0.80857 0.86147 1.23157 0.97345 0.98788 0.97757 1.23306 1.04343 0.89979 0.90528 0.84455 1.60577 1.12889 0.99981 1.53414 1.21749 0.92791 0.90139 1.03058 1.20649 0.85469 0.88555 0.82834 1.90495 1.21457 1.82059 1.56765 1.41923 1.08593 1.06393 1.63794 1.19737 0.94604 0.83052 1.49115 0.90093 1.26091 0.94350 1.04632 0.96170 1.69684 0.99526 1.37034 1.49823 0.84834 0.78349 0.76567 0.78347 1.19652 1.19702 1.19368 1.24892 0.80297 0.73321 0.92427 1.90681 1.34702 1.51350 1.60768 1.87284 1.32593 1.65520 1.43494 0.87132 0.91238 0.92423 0.87850 0.84827 0.83563 0.86066 0.92419 0.76949 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.49 71.98 0.68 -0.99 16 2 C 0.07 1.01 4.13 31.06 0.13 1.14 16 3 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.13 -1.86 6.54 31.56 0.21 -1.65 16 5 C 0.03 0.68 3.37 44.93 0.15 0.83 16 6 H 0.14 2.56 7.82 -2.39 -0.02 2.54 16 7 N -0.64 -19.73 5.86 -495.50 -2.90 -22.63 16 8 C 0.05 1.94 6.01 85.56 0.51 2.45 16 9 C 0.44 21.20 7.82 87.66 0.69 21.88 16 10 O -0.62 -34.57 15.78 -3.08 -0.05 -34.61 16 11 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 12 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 13 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 14 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 15 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 16 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.45 12.79 7.83 71.49 0.56 13.35 16 21 O -0.49 -17.84 18.00 21.55 0.39 -17.45 16 22 O -0.37 -9.34 10.87 -55.08 -0.60 -9.94 16 23 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.10 1.63 7.65 -2.39 -0.02 1.61 16 27 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.35 11.95 8.14 -89.69 -0.73 11.22 16 29 H 0.12 3.62 8.07 -2.39 -0.02 3.60 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 32 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -73.61 283.96 1.43 -72.18 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.31 Total: 30.36 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 4.21 Total: 18.32 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.24 Total: -104.07 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -0.26 Total: -62.01 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.61 1.43 -72.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380215373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.370 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds