Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.38054 * 119.99872 * 85.00136 * 12 2 1 14 14 N 1.32513 * 119.65770 * 0.02562 * 13 12 2 15 15 C 1.31591 * 121.95614 * 179.97438 * 14 13 12 16 16 C 1.39815 * 120.99987 * 0.02603 * 15 14 13 17 17 C 1.43201 * 120.40002 * 179.97438 * 16 15 14 18 18 N 7.49748 * 98.21811 * 292.00933 * 2 1 3 19 19 C 1.39915 * 119.19942 * 359.97200 * 16 15 14 20 20 C 1.39570 * 118.22694 * 359.73399 * 19 16 15 21 21 C 1.43204 * 120.53370 * 180.28104 * 20 19 16 22 22 N 4.96262 * 110.26588 * 227.25305 * 2 1 3 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 28 28 H 1.07997 * 119.50104 * 179.97438 * 15 14 13 29 29 H 1.07992 * 120.88616 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1502 -0.0020 -2.3853 14 7 1.8336 1.2837 -2.4371 15 6 1.9423 1.9836 -3.5461 16 6 2.4005 1.3937 -4.7280 17 6 2.5132 2.1674 -5.9277 18 7 2.6017 2.7809 -6.8797 19 6 2.7475 0.0383 -4.7243 20 6 2.6254 -0.6712 -3.5286 21 6 2.9727 -2.0592 -3.4675 22 7 3.2489 -3.1599 -3.4187 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 2.2490 -1.6318 -1.1526 28 1 1.6727 3.0294 -3.5435 29 1 3.1041 -0.4451 -5.6218 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381161262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = 92.149541 kcal Electronic energy + Delta-G solvation = -15783.949808 eV Core-core repulsion = 13093.348457 eV Total energy + Delta-G solvation = -2690.601351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41519 -36.99886 -36.38130 -35.84203 -33.16355 -32.61574 -30.81427 -28.43391 -25.46363 -24.70136 -23.54092 -20.86934 -20.14810 -18.21643 -16.98367 -16.58723 -16.19926 -14.97883 -14.81894 -14.30648 -13.69628 -13.54291 -13.39464 -13.24103 -13.02029 -12.90745 -12.75747 -12.55642 -12.09719 -12.02686 -11.30199 -11.15501 -10.94204 -10.51095 -10.35932 -9.96204 -9.75721 -9.43933 -9.18342 -8.63347 -7.46305 -6.28206 -4.38285 0.78405 0.98147 2.65366 2.76047 2.90535 3.16682 3.24163 3.25842 3.32467 3.50368 3.89273 4.06669 4.13904 4.23549 4.56721 4.68811 5.05180 5.08888 5.42722 5.66118 5.83193 6.23377 6.61190 6.81072 6.89727 7.12099 7.37045 7.47977 7.55888 7.57832 7.69189 7.95257 8.00736 8.35945 8.67922 9.29322 10.77395 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.005808 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.510251 B = 4819.382266 C = 5486.685986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.065 0.935 4 C -0.543 4.543 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.880 5.880 8 Si 0.902 3.098 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.660 5.660 13 C 0.476 3.524 14 N -0.524 5.524 15 C 0.248 3.752 16 C -0.186 4.186 17 C 0.278 3.722 18 N -0.443 5.443 19 C 0.073 3.927 20 C -0.180 4.180 21 C 0.266 3.734 22 N -0.427 5.427 23 H 0.020 0.980 24 H 0.095 0.905 25 H 0.026 0.974 26 H 0.267 0.733 27 H 0.404 0.596 28 H 0.169 0.831 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 0.849 -9.074 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.582 4.582 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.517 5.517 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.277 5.277 13 C 0.229 3.771 14 N -0.240 5.240 15 C 0.078 3.922 16 C -0.196 4.196 17 C -0.037 4.037 18 N -0.119 5.119 19 C 0.043 3.957 20 C -0.193 4.193 21 C -0.048 4.048 22 N -0.104 5.104 23 H 0.039 0.961 24 H 0.113 0.887 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.240 0.760 28 H 0.186 0.814 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.031 0.588 -9.183 9.259 hybrid contribution 0.531 -1.048 0.511 1.281 sum 1.561 -0.461 -8.672 8.824 Atomic orbital electron populations 1.22110 0.97668 0.99425 1.01430 1.19100 0.91521 0.94373 0.78929 0.91730 1.21171 1.33121 1.13620 0.90243 0.92085 1.24824 0.94541 0.94885 0.99007 1.69869 1.35342 1.22236 1.24214 0.86433 0.78720 0.79929 0.82001 1.20394 1.20906 1.19826 1.46003 1.61236 1.12618 1.07839 1.18631 0.84730 0.88153 0.85578 1.67634 1.23532 1.05250 1.27628 1.22882 0.85315 0.99234 0.84813 1.16360 1.19377 0.93226 0.90661 1.25275 0.92748 0.93246 0.92436 1.81251 1.10941 1.08934 1.10798 1.21197 0.87514 0.91176 0.95803 1.15997 1.19953 0.87723 0.95656 1.25223 0.93150 0.92165 0.94285 1.81259 1.10670 1.11699 1.06766 0.96060 0.88692 0.95471 0.92339 0.76034 0.81410 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.27 37.16 0.34 -2.86 15 2 C 0.26 5.78 2.56 -69.08 -0.18 5.60 15 3 H 0.06 1.57 7.52 -51.93 -0.39 1.18 15 4 C -0.54 -13.36 8.73 -34.44 -0.30 -13.66 15 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 7 N -0.88 -22.82 11.32 55.43 0.63 -22.19 15 8 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 15 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 12 N -0.66 -12.05 5.11 -54.84 -0.28 -12.33 15 13 C 0.48 7.39 7.46 -155.23 -1.16 6.23 15 14 N -0.52 -7.91 9.13 -11.87 -0.11 -8.02 15 15 C 0.25 2.77 10.90 -17.07 -0.19 2.59 15 16 C -0.19 -1.91 5.75 -106.75 -0.61 -2.53 15 17 C 0.28 3.12 15.36 -22.47 -0.35 2.78 15 18 N -0.44 -5.95 18.54 41.84 0.78 -5.18 15 19 C 0.07 0.74 9.62 -38.46 -0.37 0.37 15 20 C -0.18 -2.32 5.76 -106.53 -0.61 -2.93 15 21 C 0.27 3.77 14.09 -22.47 -0.32 3.46 15 22 N -0.43 -6.82 18.54 41.83 0.78 -6.04 15 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.09 2.29 6.07 -51.93 -0.32 1.97 15 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 26 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15 27 H 0.40 7.14 7.35 -40.82 -0.30 6.84 15 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 15 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -26.92 277.68 -5.11 -32.03 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -2.24 Total: 2.11 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.83 Total: 0.74 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 1.79 Total: -53.77 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.92 -5.11 -32.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381161262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.181 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds