Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.38054 * 119.99872 * 85.00136 * 12 2 1 14 14 N 1.32513 * 119.65770 * 0.02562 * 13 12 2 15 15 C 1.31591 * 121.95614 * 179.97438 * 14 13 12 16 16 C 1.39815 * 120.99987 * 0.02603 * 15 14 13 17 17 C 1.43201 * 120.40002 * 179.97438 * 16 15 14 18 18 N 7.49748 * 98.21811 * 292.00933 * 2 1 3 19 19 C 1.39915 * 119.19942 * 359.97200 * 16 15 14 20 20 C 1.39570 * 118.22694 * 359.73399 * 19 16 15 21 21 C 1.43204 * 120.53370 * 180.28104 * 20 19 16 22 22 N 4.96262 * 110.26588 * 227.25305 * 2 1 3 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 28 28 H 1.07997 * 119.50104 * 179.97438 * 15 14 13 29 29 H 1.07992 * 120.88616 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1502 -0.0020 -2.3853 14 7 1.8336 1.2837 -2.4371 15 6 1.9423 1.9836 -3.5461 16 6 2.4005 1.3937 -4.7280 17 6 2.5132 2.1674 -5.9277 18 7 2.6017 2.7809 -6.8797 19 6 2.7475 0.0383 -4.7243 20 6 2.6254 -0.6712 -3.5286 21 6 2.9727 -2.0592 -3.4675 22 7 3.2489 -3.1599 -3.4187 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 2.2490 -1.6318 -1.1526 28 1 1.6727 3.0294 -3.5435 29 1 3.1041 -0.4451 -5.6218 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381161262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = 77.137317 kcal Electronic energy + Delta-G solvation = -15784.600787 eV Core-core repulsion = 13093.348457 eV Total energy + Delta-G solvation = -2691.252330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51139 -38.17553 -37.58377 -37.09700 -34.80829 -33.66967 -32.23208 -29.87010 -27.30169 -25.74753 -24.75631 -22.36934 -21.29210 -19.57752 -18.11166 -17.86197 -17.66477 -16.66854 -15.95926 -15.50690 -15.13122 -14.61417 -14.49394 -14.41342 -14.29736 -14.17010 -13.87563 -13.81639 -13.59632 -13.18014 -12.96133 -12.89060 -12.66818 -12.24826 -12.13365 -11.24443 -11.02357 -10.82776 -10.59377 -10.40907 -8.72185 -8.17327 -6.32508 -0.24167 0.01800 1.43241 1.45782 1.53891 1.57016 1.76986 1.83551 2.22927 2.30660 2.46161 2.81055 3.04762 3.12699 3.14068 3.56263 3.84201 3.92657 4.49507 4.66068 4.82776 4.92909 5.07159 5.14768 5.29852 5.51575 5.65229 5.85075 6.00232 6.21864 6.43873 6.54676 6.62758 6.75121 7.20683 7.38858 8.87414 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.005808 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.510251 B = 4819.382266 C = 5486.685986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.276 3.724 3 H 0.038 0.962 4 C -0.556 4.556 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.905 5.905 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.679 5.679 13 C 0.466 3.534 14 N -0.556 5.556 15 C 0.254 3.746 16 C -0.162 4.162 17 C 0.303 3.697 18 N -0.471 5.471 19 C 0.094 3.906 20 C -0.177 4.177 21 C 0.284 3.716 22 N -0.460 5.460 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.404 0.596 28 H 0.197 0.803 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 0.995 -10.547 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.173 3.827 3 H 0.056 0.944 4 C -0.595 4.595 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.542 5.542 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.299 5.299 13 C 0.223 3.777 14 N -0.273 5.273 15 C 0.086 3.914 16 C -0.172 4.172 17 C -0.011 4.011 18 N -0.148 5.148 19 C 0.065 3.935 20 C -0.189 4.189 21 C -0.030 4.030 22 N -0.137 5.137 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.239 0.761 28 H 0.214 0.786 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.497 0.760 -10.723 10.853 hybrid contribution 0.407 -0.992 0.799 1.338 sum 1.904 -0.232 -9.923 10.107 Atomic orbital electron populations 1.21917 0.97783 0.98935 1.00697 1.18575 0.91298 0.92959 0.79861 0.94398 1.21523 1.32813 1.13544 0.91579 0.92407 1.25520 0.94853 0.95544 1.01485 1.69978 1.36321 1.23328 1.24612 0.85568 0.78116 0.78915 0.79083 1.20239 1.20705 1.19638 1.45556 1.63822 1.12572 1.07928 1.18747 0.85151 0.88566 0.85283 1.67635 1.24737 1.05405 1.29532 1.23332 0.83976 1.00170 0.83940 1.16269 1.17935 0.93091 0.89944 1.25069 0.91790 0.92424 0.91852 1.81310 1.11817 1.09885 1.11820 1.21504 0.85435 0.90751 0.95813 1.15900 1.20238 0.87120 0.95679 1.25306 0.92227 0.92147 0.93285 1.81279 1.11934 1.12696 1.07821 0.94735 0.91295 0.95702 0.92403 0.76056 0.78590 0.80327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 9.27 71.98 0.67 -5.26 15 2 C 0.28 12.39 2.56 44.25 0.11 12.50 15 3 H 0.04 1.90 7.52 -2.39 -0.02 1.88 15 4 C -0.56 -27.77 8.73 25.60 0.22 -27.55 15 5 H 0.06 2.84 7.74 -2.91 -0.02 2.82 15 6 C 0.03 1.39 5.30 84.66 0.45 1.84 15 7 N -0.90 -47.76 11.32 21.45 0.24 -47.52 15 8 Si 0.96 40.68 29.54 68.60 2.03 42.71 15 9 H -0.28 -11.60 7.11 99.48 0.71 -10.90 15 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 12 N -0.68 -24.84 5.11 -327.43 -1.67 -26.51 15 13 C 0.47 13.97 7.46 133.75 1.00 14.97 15 14 N -0.56 -16.01 9.13 -191.47 -1.75 -17.76 15 15 C 0.25 4.96 10.90 85.11 0.93 5.89 15 16 C -0.16 -2.75 5.75 -21.25 -0.12 -2.87 15 17 C 0.30 5.72 15.36 88.33 1.36 7.08 15 18 N -0.47 -11.31 18.54 19.00 0.35 -10.95 15 19 C 0.09 1.55 9.62 23.00 0.22 1.77 15 20 C -0.18 -4.14 5.76 -21.10 -0.12 -4.26 15 21 C 0.28 7.61 14.09 88.33 1.24 8.85 15 22 N -0.46 -14.21 18.54 19.00 0.35 -13.86 15 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.07 3.40 6.07 -2.39 -0.01 3.39 15 25 H 0.02 1.05 8.14 -2.38 -0.02 1.03 15 26 H 0.27 13.42 8.31 -92.71 -0.77 12.65 15 27 H 0.40 14.41 7.35 -92.71 -0.68 13.73 15 28 H 0.20 2.63 8.06 -2.91 -0.02 2.61 15 29 H 0.18 1.81 8.06 -2.91 -0.02 1.78 15 Total: -1.00 -58.36 277.68 6.04 -52.32 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.53 Total: 8.62 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.96 Total: 12.96 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -2.47 Total: -116.61 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -58.36 6.04 -52.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381161262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.456 kcal (2) G-P(sol) polarization free energy of solvation -58.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds