Wall clock time and date at job start Mon Mar 30 2020 03:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46723 * 2 1 4 4 O 1.42897 * 113.41527 * 51.80636 * 3 2 1 5 5 C 1.53504 * 114.20318 * 185.00157 * 3 2 1 6 6 N 1.47066 * 88.04678 * 139.68379 * 5 3 2 7 7 C 1.34784 * 136.05409 * 152.81416 * 6 5 3 8 8 O 1.21436 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.48830 * 119.99595 * 179.97438 * 7 6 5 10 10 O 1.21503 * 120.00313 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99590 * 179.97438 * 9 7 6 12 12 C 1.36118 * 119.99977 * 179.97438 * 11 9 7 13 13 H 1.08000 * 119.99998 * 0.02562 * 12 11 9 14 14 C 1.39587 * 120.00222 * 179.97438 * 12 11 9 15 15 N 1.31013 * 120.00013 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00240 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46792 * 90.00131 * 16 14 12 18 18 H 1.48495 * 109.47589 * 210.00469 * 16 14 12 19 19 H 1.48503 * 109.46899 * 330.00592 * 16 14 12 20 20 C 1.47063 * 87.88808 * 332.85048 * 6 5 3 21 21 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99564 * 1 2 3 23 23 H 1.08996 * 109.47164 * 59.99955 * 1 2 3 24 24 H 1.09000 * 109.46986 * 240.00436 * 2 1 3 25 25 H 1.08996 * 109.47164 * 120.00045 * 2 1 3 26 26 H 0.96703 * 113.99737 * 313.19287 * 4 3 2 27 27 H 1.09002 * 113.46865 * 24.87475 * 5 3 2 28 28 H 1.08999 * 113.46581 * 254.49251 * 5 3 2 29 29 H 0.96995 * 120.00310 * 0.02562 * 11 9 7 30 30 H 0.96998 * 120.00290 * 180.02562 * 15 14 12 31 31 H 1.08994 * 113.46736 * 141.90207 * 20 6 5 32 32 H 1.09003 * 113.46602 * 272.28166 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.4647 2.2481 1.0306 5 6 3.5647 1.5710 -0.1221 6 7 3.3458 2.7108 -1.0254 7 6 4.0285 3.8205 -1.3706 8 8 5.1144 4.0440 -0.8751 9 6 3.4519 4.7712 -2.3599 10 8 2.3657 4.5472 -2.8560 11 7 4.1344 5.8811 -2.7047 12 6 3.6073 6.7503 -3.6099 13 1 2.6421 6.5509 -4.0515 14 6 4.3138 7.9002 -3.9666 15 7 5.4845 8.1424 -3.4306 16 14 3.5902 9.0935 -5.2083 17 1 2.7773 10.1136 -4.4987 18 1 4.6888 9.7637 -5.9492 19 1 2.7292 8.3516 -6.1641 20 6 2.0540 2.1073 -1.3855 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.5041 2.1649 1.1048 27 1 4.0349 0.7161 -0.6080 28 1 4.0533 1.8456 0.8128 29 1 5.0014 6.0600 -2.3084 30 1 5.9753 8.9416 -3.6782 31 1 1.2573 2.8381 -1.5246 32 1 2.1216 1.3960 -2.2087 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384146568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:57 Heat of formation + Delta-G solvation = -108.823636 kcal Electronic energy + Delta-G solvation = -17480.288908 eV Core-core repulsion = 14441.371035 eV Total energy + Delta-G solvation = -3038.917873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.91400 -40.37650 -38.80797 -36.66759 -36.11510 -33.61468 -33.43305 -30.15817 -27.76600 -27.15596 -25.32488 -23.43868 -21.32942 -20.64901 -20.00761 -18.55648 -17.93833 -17.72016 -16.91627 -16.84398 -16.00219 -15.82115 -15.67464 -15.36000 -14.98398 -14.39998 -14.01851 -13.93158 -13.68938 -13.29751 -12.99715 -12.95366 -12.61563 -12.55060 -12.37519 -12.11240 -11.84956 -11.68711 -11.46319 -11.00186 -10.30891 -10.16286 -9.87266 -8.68010 -6.13652 0.54946 1.37059 1.45816 1.49171 1.60408 2.24676 2.32463 2.79776 3.05521 3.12489 3.23983 3.76485 3.91192 4.02619 4.33720 4.43780 4.51479 4.54780 4.60546 4.74746 4.87844 4.95436 5.17775 5.22162 5.27046 5.47671 5.65249 6.23085 6.41407 6.69169 6.76169 6.92586 7.24367 7.76134 8.48250 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046017 B = 0.005215 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.329352 B = 5368.188275 C = 5748.640426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C 0.110 3.890 4 O -0.554 6.554 5 C 0.106 3.894 6 N -0.626 5.626 7 C 0.538 3.462 8 O -0.576 6.576 9 C 0.395 3.605 10 O -0.608 6.608 11 N -0.513 5.513 12 C -0.346 4.346 13 H 0.100 0.900 14 C -0.006 4.006 15 N -0.898 5.898 16 Si 1.014 2.986 17 H -0.264 1.264 18 H -0.265 1.265 19 H -0.262 1.262 20 C 0.080 3.920 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.395 0.605 27 H 0.135 0.865 28 H 0.074 0.926 29 H 0.399 0.601 30 H 0.290 0.710 31 H 0.070 0.930 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -15.237 5.166 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.161 4.161 3 C 0.068 3.932 4 O -0.364 6.364 5 C -0.015 4.015 6 N -0.360 5.360 7 C 0.325 3.675 8 O -0.457 6.457 9 C 0.180 3.820 10 O -0.498 6.498 11 N -0.147 5.147 12 C -0.475 4.475 13 H 0.117 0.883 14 C -0.210 4.210 15 N -0.535 5.535 16 Si 0.834 3.166 17 H -0.189 1.189 18 H -0.190 1.190 19 H -0.186 1.186 20 C -0.043 4.043 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.247 0.753 27 H 0.152 0.848 28 H 0.092 0.908 29 H 0.233 0.767 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.741 -14.754 5.132 17.434 hybrid contribution 0.005 0.874 -0.350 0.942 sum -7.736 -13.880 4.782 16.594 Atomic orbital electron populations 1.21817 0.94160 1.03515 1.02311 1.21896 0.97583 0.91477 1.05172 1.22489 0.92862 0.91907 0.85982 1.86522 1.27781 1.68089 1.53962 1.23550 0.96323 0.87795 0.93856 1.49149 1.22825 1.19740 1.44312 1.19782 0.83668 0.81975 0.82058 1.90659 1.22138 1.76238 1.56649 1.19432 0.87981 0.85516 0.89119 1.90505 1.22491 1.77129 1.59639 1.41660 1.19376 1.17894 1.35725 1.19993 1.05491 1.02099 1.19930 0.88265 1.26605 0.95394 0.99177 0.99797 1.69560 1.13295 1.28315 1.42371 0.84648 0.78122 0.76857 0.76963 1.18914 1.18976 1.18642 1.24089 0.84586 0.96253 0.99322 0.90398 0.91870 0.92572 0.88429 0.89044 0.75262 0.84753 0.90754 0.76660 0.90035 0.91151 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.49 71.98 0.68 -0.90 16 2 C -0.12 -1.45 5.67 30.59 0.17 -1.28 16 3 C 0.11 2.38 1.61 -10.39 -0.02 2.36 16 4 O -0.55 -13.73 13.55 -148.98 -2.02 -15.75 16 5 C 0.11 2.82 8.04 83.18 0.67 3.49 16 6 N -0.63 -23.91 3.69 -860.15 -3.17 -27.09 16 7 C 0.54 26.51 8.12 87.08 0.71 27.22 16 8 O -0.58 -30.62 17.24 -3.52 -0.06 -30.68 16 9 C 0.39 21.75 7.82 87.08 0.68 22.43 16 10 O -0.61 -34.49 14.75 -3.73 -0.05 -34.55 16 11 N -0.51 -29.75 5.25 -308.87 -1.62 -31.37 16 12 C -0.35 -20.10 9.67 84.35 0.82 -19.29 16 13 H 0.10 5.89 7.15 -2.91 -0.02 5.86 16 14 C -0.01 -0.30 5.51 85.14 0.47 0.16 16 15 N -0.90 -49.71 13.03 21.77 0.28 -49.43 16 16 Si 1.01 41.54 29.56 68.60 2.03 43.57 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 C 0.08 2.34 7.03 83.25 0.59 2.92 16 21 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.06 0.55 6.71 -2.39 -0.02 0.53 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.10 0.89 8.00 -2.39 -0.02 0.87 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.40 6.37 7.06 -74.05 -0.52 5.84 16 27 H 0.13 2.56 8.10 -2.39 -0.02 2.54 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.40 23.54 7.35 -92.71 -0.68 22.85 16 30 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 31 H 0.07 2.42 7.38 -2.39 -0.02 2.40 16 32 H 0.12 2.73 8.01 -2.39 -0.02 2.71 16 Total: -1.00 -75.70 281.96 0.11 -75.59 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.04 Total: 32.57 kcal Atomic # 6 Polarization: 32.35 SS G_CDS: 4.77 Total: 37.12 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.51 Total: -107.88 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -2.13 Total: -80.97 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -75.70 0.11 -75.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384146568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.235 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds