Wall clock time and date at job start Mon Mar 30 2020 03:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00297 * 2 1 4 4 C 1.54330 * 109.87887 * 121.09629 * 2 1 3 5 5 C 1.55155 * 102.94292 * 97.22462 * 4 2 1 6 6 H 1.09001 * 111.03206 * 277.41316 * 5 4 2 7 7 O 1.42892 * 111.00669 * 153.57733 * 5 4 2 8 8 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 9 9 N 1.47026 * 109.88306 * 238.89944 * 2 1 3 10 10 C 1.34780 * 125.64391 * 59.56393 * 9 2 1 11 11 O 1.21436 * 120.00243 * 359.97438 * 10 9 2 12 12 C 1.48829 * 119.99796 * 180.02562 * 10 9 2 13 13 O 1.21503 * 120.00127 * 359.97438 * 12 10 9 14 14 N 1.34772 * 120.00048 * 179.97438 * 12 10 9 15 15 C 1.36119 * 119.99963 * 179.97438 * 14 12 10 16 16 H 1.08001 * 120.00128 * 0.02562 * 15 14 12 17 17 C 1.39593 * 119.99803 * 180.02562 * 15 14 12 18 18 N 1.31010 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99819 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47443 * 89.99593 * 19 17 15 21 21 H 1.48500 * 109.47202 * 209.99926 * 19 17 15 22 22 H 1.48501 * 109.46983 * 329.99419 * 19 17 15 23 23 H 1.08992 * 109.47824 * 179.64232 * 1 2 3 24 24 H 1.09003 * 109.47081 * 299.64934 * 1 2 3 25 25 H 1.09003 * 109.46640 * 59.63966 * 1 2 3 26 26 H 1.08998 * 110.71700 * 215.58388 * 4 2 1 27 27 H 1.08991 * 110.72004 * 338.85679 * 4 2 1 28 28 H 0.96698 * 114.00217 * 186.34917 * 7 5 4 29 29 H 1.08997 * 110.36783 * 204.15179 * 8 5 4 30 30 H 1.08997 * 110.45914 * 81.87830 * 8 5 4 31 31 H 0.96999 * 119.99980 * 359.97438 * 14 12 10 32 32 H 0.97002 * 119.99787 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 6 2.3517 -2.1695 0.6925 6 1 1.4454 -2.7742 0.6605 7 8 3.3678 -2.8151 1.4623 8 6 2.8567 -1.8499 -0.7367 9 7 2.0300 -0.7142 -1.1839 10 6 1.7754 -0.3846 -2.4657 11 8 1.0776 0.5767 -2.7184 12 6 2.3484 -1.1994 -3.5715 13 8 3.0461 -2.1615 -3.3187 14 7 2.0933 -0.8701 -4.8532 15 6 2.6178 -1.6151 -5.8646 16 1 3.2380 -2.4702 -5.6399 17 6 2.3541 -1.2737 -7.1922 18 7 1.6014 -0.2367 -7.4647 19 14 3.0733 -2.2964 -8.5800 20 1 2.1284 -3.3864 -8.9328 21 1 3.2976 -1.4324 -9.7668 22 1 4.3657 -2.8835 -8.1439 23 1 -0.3634 -1.0275 -0.0064 24 1 -0.3633 0.5084 0.8931 25 1 -0.3633 0.5194 -0.8868 26 1 2.9656 -0.2833 1.6183 27 1 1.2917 -0.7890 2.0201 28 1 3.6562 -3.6640 1.1000 29 1 2.7086 -2.7082 -1.3921 30 1 3.9092 -1.5675 -0.7146 31 1 1.5360 -0.1023 -5.0551 32 1 1.4178 0.0003 -8.3873 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384790823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:43 Heat of formation + Delta-G solvation = -141.260886 kcal Electronic energy + Delta-G solvation = -17742.902299 eV Core-core repulsion = 14702.577841 eV Total energy + Delta-G solvation = -3040.324457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68223 -39.85068 -38.72281 -36.80177 -36.21240 -33.55315 -32.76113 -30.89158 -27.95955 -26.87509 -25.41101 -23.08963 -21.72195 -20.59348 -19.95912 -18.64986 -18.25876 -17.76968 -16.94303 -16.69875 -16.13017 -15.75764 -15.32105 -14.90320 -14.76166 -14.54187 -14.46789 -13.92341 -13.69496 -13.51266 -13.04753 -12.95243 -12.59601 -12.44207 -12.33968 -12.11882 -11.86588 -11.70784 -11.60185 -11.10299 -10.29362 -10.07335 -9.81636 -8.67093 -6.11998 0.56839 1.39235 1.46168 1.52640 1.63918 2.25500 2.33480 2.92500 3.13352 3.27006 3.54986 3.63009 3.95507 3.98616 4.15564 4.32108 4.36013 4.65918 4.79516 4.86749 4.88845 4.97882 5.09222 5.22413 5.24644 5.41468 5.67300 6.14946 6.29904 6.72701 6.80577 6.94596 7.26354 7.78055 8.48865 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.039201 B = 0.005904 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.088279 B = 4741.309940 C = 5350.289569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.077 0.923 4 C -0.108 4.108 5 C 0.101 3.899 6 H 0.087 0.913 7 O -0.563 6.563 8 C 0.071 3.929 9 N -0.589 5.589 10 C 0.529 3.471 11 O -0.563 6.563 12 C 0.391 3.609 13 O -0.606 6.606 14 N -0.511 5.511 15 C -0.344 4.344 16 H 0.100 0.900 17 C -0.005 4.005 18 N -0.897 5.897 19 Si 1.011 2.989 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.263 1.263 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.399 0.601 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -2.805 13.882 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.095 0.905 4 C -0.146 4.146 5 C 0.041 3.959 6 H 0.105 0.895 7 O -0.371 6.371 8 C -0.052 4.052 9 N -0.324 5.324 10 C 0.314 3.686 11 O -0.442 6.442 12 C 0.176 3.824 13 O -0.495 6.495 14 N -0.145 5.145 15 C -0.474 4.474 16 H 0.118 0.882 17 C -0.209 4.209 18 N -0.535 5.535 19 Si 0.832 3.168 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.187 1.187 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.250 0.750 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.362 -2.262 14.055 14.241 hybrid contribution 0.057 -0.218 -1.497 1.514 sum -0.304 -2.480 12.558 12.805 Atomic orbital electron populations 1.22137 0.93597 1.02668 1.03250 1.21932 0.95787 0.96690 0.83346 0.90480 1.22712 1.03441 0.92736 0.95664 1.22915 0.90863 0.94607 0.87535 0.89488 1.86430 1.57890 1.40376 1.52361 1.23332 0.94928 0.89747 0.97202 1.48151 1.49635 1.30689 1.03921 1.19875 0.80875 0.84310 0.83536 1.90663 1.39876 1.29717 1.83986 1.19495 0.89531 0.89253 0.84110 1.90490 1.44291 1.31621 1.83094 1.41649 1.41721 1.26804 1.04353 1.19983 1.30416 1.11555 0.85434 0.88196 1.26560 0.95930 0.97516 1.00935 1.69555 1.34951 1.26074 1.22900 0.84677 0.78813 0.77588 0.75721 1.18892 1.19203 1.18745 0.92134 0.88191 0.93943 0.89139 0.86375 0.75020 0.89591 0.91486 0.76616 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.06 71.98 0.65 -3.28 16 2 C 0.12 3.33 3.49 45.34 0.16 3.49 16 3 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 4 C -0.11 -2.12 6.23 31.78 0.20 -1.92 16 5 C 0.10 2.20 4.43 31.98 0.14 2.34 16 6 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 7 O -0.56 -11.14 13.47 -148.98 -2.01 -13.15 16 8 C 0.07 2.21 5.79 86.86 0.50 2.71 16 9 N -0.59 -21.05 3.08 -790.32 -2.43 -23.49 16 10 C 0.53 24.01 7.67 87.08 0.67 24.68 16 11 O -0.56 -27.31 15.36 -3.52 -0.05 -27.36 16 12 C 0.39 20.31 7.78 87.08 0.68 20.99 16 13 O -0.61 -32.31 13.33 -3.73 -0.05 -32.36 16 14 N -0.51 -28.36 5.25 -308.87 -1.62 -29.98 16 15 C -0.34 -19.37 9.67 84.36 0.82 -18.55 16 16 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 17 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 18 N -0.90 -48.48 13.03 21.77 0.28 -48.19 16 19 Si 1.01 40.66 29.56 68.60 2.03 42.69 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.34 6.74 -2.39 -0.02 1.33 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.65 7.83 -2.39 -0.02 1.63 16 28 H 0.40 5.08 9.11 -74.06 -0.67 4.40 16 29 H 0.09 3.08 6.15 -2.39 -0.01 3.06 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.40 22.53 7.35 -92.71 -0.68 21.85 16 32 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -67.83 275.52 0.24 -67.60 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.19 Total: 33.59 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 4.28 Total: 30.66 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -3.77 Total: -101.66 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -2.11 Total: -72.88 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -67.83 0.24 -67.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384790823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.666 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds