Wall clock time and date at job start Mon Mar 30 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.46900 * 179.97438 * 12 11 10 14 14 C 1.76196 * 99.99843 * 179.97438 * 13 12 11 15 15 N 1.31652 * 125.41834 * 359.69616 * 14 13 12 16 16 C 1.34550 * 110.07827 * 179.82966 * 15 14 13 17 17 N 1.31034 * 126.01484 * 180.14829 * 16 15 14 18 18 N 1.38315 * 107.96583 * 0.42757 * 16 15 14 19 19 H 0.97002 * 126.95870 * 179.72138 * 18 16 15 20 20 N 1.36856 * 125.41429 * 180.02562 * 14 13 12 21 21 H 0.96996 * 126.64872 * 359.97438 * 20 14 13 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 25 25 H 1.08993 * 109.46765 * 59.99668 * 10 9 7 26 26 H 1.09000 * 109.46866 * 300.00069 * 10 9 7 27 27 H 1.08993 * 109.47839 * 60.00073 * 11 10 9 28 28 H 1.09000 * 109.47160 * 299.99635 * 11 10 9 29 29 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 31 31 H 0.96999 * 120.00387 * 0.33422 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4748 -6.1500 -0.0005 13 16 1.5698 -7.7175 -0.0005 14 6 2.9196 -8.8500 -0.0005 15 7 4.1937 -8.5185 -0.0062 16 6 4.9589 -9.6252 -0.0006 17 7 6.2689 -9.6561 -0.0011 18 7 4.1194 -10.7244 -0.0005 19 1 4.3814 -11.6584 -0.0009 20 7 2.8102 -10.2142 -0.0010 21 1 1.9883 -10.7291 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 0.8541 -5.0446 -0.8913 28 1 0.8535 -5.0451 0.8886 29 1 3.1020 -6.0921 -0.8901 30 1 3.1008 -6.0922 0.8899 31 1 6.7736 -8.8277 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:08 Heat of formation + Delta-G solvation = 89.283370 kcal Electronic energy + Delta-G solvation = -14158.254114 eV Core-core repulsion = 11602.972428 eV Total energy + Delta-G solvation = -2555.281686 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.65070 -35.33511 -34.29086 -32.99973 -32.64851 -29.77089 -29.49913 -25.45096 -23.83635 -22.00076 -21.43741 -20.19020 -19.72452 -16.92685 -16.58184 -16.21359 -15.90861 -15.42168 -15.18113 -14.63532 -14.35251 -12.97651 -12.83026 -12.19545 -11.69285 -11.64714 -11.25796 -11.17782 -11.00129 -10.95147 -10.71045 -10.51858 -10.45313 -9.73467 -9.58533 -9.34455 -9.07193 -8.35511 -8.26062 -7.83538 -6.00668 -4.02973 0.49152 1.03369 1.63140 1.92384 3.22050 3.32536 3.38881 3.42548 3.79692 4.46051 4.68411 5.06637 5.07653 5.35493 5.50997 5.53951 5.64649 5.87772 6.03931 6.29279 6.36452 6.64112 6.80104 7.07264 7.37386 7.54129 7.66155 7.79334 7.99188 8.41559 8.46667 9.04250 9.61421 11.10633 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.048053 B = 0.003597 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.550922 B = 7782.716758 C = 8334.216221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.094 4.094 13 S 0.010 5.990 14 C 0.368 3.632 15 N -0.582 5.582 16 C 0.559 3.441 17 N -0.775 5.775 18 N -0.537 5.537 19 H 0.449 0.551 20 N -0.498 5.498 21 H 0.450 0.550 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -20.487 0.016 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.147 4.147 12 C -0.243 4.243 13 S 0.240 5.760 14 C -0.016 4.016 15 N -0.326 5.326 16 C 0.186 3.814 17 N -0.423 5.423 18 N -0.283 5.283 19 H 0.298 0.702 20 N -0.232 5.232 21 H 0.298 0.702 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.970 -20.799 0.014 20.822 hybrid contribution 0.968 0.496 -0.007 1.088 sum 1.938 -20.303 0.007 20.395 Atomic orbital electron populations 1.69961 1.06052 1.26612 1.50930 1.25023 0.94849 0.99274 0.95322 0.86600 0.79879 0.83457 0.78115 1.20667 1.21253 1.19841 1.21263 0.93105 0.91066 1.50514 0.92621 1.19111 0.93977 0.91213 0.97334 1.21635 0.99160 0.92519 1.00951 1.21575 0.97203 0.92934 1.03012 1.23958 1.01573 0.90828 1.07891 1.86008 1.01875 0.98250 1.89851 1.26278 0.99052 0.85073 0.91223 1.72244 0.99160 1.27794 1.33357 1.20342 0.90478 0.79754 0.90780 1.69635 0.99003 1.36239 1.37462 1.44762 0.93698 1.08096 1.81764 0.70206 1.44700 0.99317 1.04183 1.75022 0.70178 0.93008 0.96500 0.96496 0.92873 0.92885 0.91168 0.91178 0.88084 0.88100 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 11 C -0.11 -1.58 5.22 -26.73 -0.14 -1.72 16 12 C -0.09 -1.16 5.17 37.16 0.19 -0.97 16 13 S 0.01 0.10 22.31 -107.50 -2.40 -2.30 16 14 C 0.37 4.04 8.30 -87.73 -0.73 3.31 16 15 N -0.58 -8.10 10.54 -13.57 -0.14 -8.24 16 16 C 0.56 7.72 9.37 -322.09 -3.02 4.70 16 17 N -0.78 -11.53 14.18 29.86 0.42 -11.11 16 18 N -0.54 -5.17 7.63 29.86 0.23 -4.94 16 19 H 0.45 3.01 8.96 -182.28 -1.63 1.37 16 20 N -0.50 -3.97 7.53 30.79 0.23 -3.74 16 21 H 0.45 1.78 8.96 -182.29 -1.63 0.15 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.10 1.29 8.14 -51.91 -0.42 0.87 16 31 H 0.35 5.19 8.92 -40.82 -0.36 4.82 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -32.84 287.14 -12.55 -45.39 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.56 Total: -0.29 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.38 Total: -9.71 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 1.48 Total: -53.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.40 Total: -2.30 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.84 -12.55 -45.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.676 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds