Wall clock time and date at job start Mon Mar 30 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.46900 * 179.97438 * 12 11 10 14 14 C 1.76196 * 99.99843 * 179.97438 * 13 12 11 15 15 N 1.31652 * 125.41834 * 359.69616 * 14 13 12 16 16 C 1.34550 * 110.07827 * 179.82966 * 15 14 13 17 17 N 1.31034 * 126.01484 * 180.14829 * 16 15 14 18 18 N 1.38315 * 107.96583 * 0.42757 * 16 15 14 19 19 H 0.97002 * 126.95870 * 179.72138 * 18 16 15 20 20 N 1.36856 * 125.41429 * 180.02562 * 14 13 12 21 21 H 0.96996 * 126.64872 * 359.97438 * 20 14 13 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 25 25 H 1.08993 * 109.46765 * 59.99668 * 10 9 7 26 26 H 1.09000 * 109.46866 * 300.00069 * 10 9 7 27 27 H 1.08993 * 109.47839 * 60.00073 * 11 10 9 28 28 H 1.09000 * 109.47160 * 299.99635 * 11 10 9 29 29 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 31 31 H 0.96999 * 120.00387 * 0.33422 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4748 -6.1500 -0.0005 13 16 1.5698 -7.7175 -0.0005 14 6 2.9196 -8.8500 -0.0005 15 7 4.1937 -8.5185 -0.0062 16 6 4.9589 -9.6252 -0.0006 17 7 6.2689 -9.6561 -0.0011 18 7 4.1194 -10.7244 -0.0005 19 1 4.3814 -11.6584 -0.0009 20 7 2.8102 -10.2142 -0.0010 21 1 1.9883 -10.7291 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 0.8541 -5.0446 -0.8913 28 1 0.8535 -5.0451 0.8886 29 1 3.1020 -6.0921 -0.8901 30 1 3.1008 -6.0922 0.8899 31 1 6.7736 -8.8277 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385197877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:08 Heat of formation + Delta-G solvation = 69.153615 kcal Electronic energy + Delta-G solvation = -14159.127006 eV Core-core repulsion = 11602.972428 eV Total energy + Delta-G solvation = -2556.154578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.53027 -36.86651 -35.21722 -34.65758 -33.83683 -31.29822 -30.56788 -27.17768 -24.91010 -23.44964 -22.44773 -21.72212 -20.56234 -18.40753 -17.74535 -17.48835 -16.84038 -16.50080 -16.38858 -16.33201 -15.52251 -14.53459 -14.46246 -13.76596 -13.36239 -12.93326 -12.57995 -12.49510 -12.35470 -12.32816 -12.01903 -11.91726 -11.65971 -11.37657 -11.28795 -11.00170 -10.59231 -10.51096 -9.06551 -8.76528 -8.16982 -6.27014 -0.35031 0.15132 0.81834 1.01743 1.42751 1.43189 1.54428 2.23041 2.43838 2.98679 3.16517 3.78816 3.94548 3.99476 4.41426 4.56989 4.66193 4.71235 4.85355 4.89761 5.14585 5.29892 5.32259 5.57741 5.58747 5.82493 5.92014 6.30264 6.56548 6.74421 6.90801 7.42106 7.47787 8.94564 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.048053 B = 0.003597 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.550922 B = 7782.716758 C = 8334.216221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.099 4.099 13 S 0.068 5.932 14 C 0.360 3.640 15 N -0.618 5.618 16 C 0.549 3.451 17 N -0.804 5.804 18 N -0.524 5.524 19 H 0.463 0.537 20 N -0.471 5.471 21 H 0.470 0.530 22 H 0.263 0.737 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -21.545 0.011 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.137 4.137 12 C -0.248 4.248 13 S 0.298 5.702 14 C -0.024 4.024 15 N -0.364 5.364 16 C 0.175 3.825 17 N -0.454 5.454 18 N -0.270 5.270 19 H 0.315 0.685 20 N -0.207 5.207 21 H 0.323 0.677 22 H 0.072 0.928 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.754 -21.927 0.008 21.940 hybrid contribution 0.904 0.765 -0.006 1.184 sum 1.658 -21.162 0.002 21.227 Atomic orbital electron populations 1.70082 1.07646 1.27670 1.51892 1.25933 0.95754 1.03178 0.94905 0.85514 0.78718 0.78790 0.78439 1.19871 1.20801 1.18904 1.21757 0.93580 0.92655 1.50198 0.92355 1.19038 0.94509 0.92832 0.95159 1.21414 0.98038 0.92843 1.01042 1.21323 0.97148 0.91748 1.03434 1.23702 1.01145 0.92171 1.07752 1.85783 0.99342 0.95667 1.89435 1.26462 0.98743 0.86346 0.90874 1.72192 1.00363 1.28517 1.35289 1.20561 0.90655 0.80844 0.90431 1.69654 0.99796 1.35991 1.39993 1.44760 0.93800 1.08122 1.80360 0.68511 1.44695 0.99472 1.03501 1.73044 0.67665 0.92824 0.98633 0.98629 0.92777 0.92771 0.90764 0.90772 0.88353 0.88361 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.55 5.15 30.60 0.16 -3.39 16 11 C -0.10 -2.75 5.22 30.60 0.16 -2.59 16 12 C -0.10 -2.30 5.17 71.98 0.37 -1.92 16 13 S 0.07 1.17 22.31 -56.49 -1.26 -0.09 16 14 C 0.36 7.06 8.30 179.34 1.49 8.55 16 15 N -0.62 -16.45 10.54 -196.85 -2.07 -18.52 16 16 C 0.55 14.58 9.37 261.24 2.45 17.03 16 17 N -0.80 -23.90 14.18 -59.44 -0.84 -24.74 16 18 N -0.52 -8.94 7.63 -59.44 -0.45 -9.39 16 19 H 0.46 5.13 8.96 -213.05 -1.91 3.22 16 20 N -0.47 -6.13 7.53 -56.51 -0.43 -6.55 16 21 H 0.47 1.98 8.96 -213.06 -1.91 0.07 16 22 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 23 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.35 10.45 8.92 -92.71 -0.83 9.62 16 Total: -1.00 -71.17 287.14 -0.75 -71.92 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.47 Total: 8.03 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.47 Total: -10.95 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.51 Total: -115.00 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.26 Total: -0.09 kcal Total: -71.17 -0.75 -71.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.078 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds