Wall clock time and date at job start Mon Mar 30 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40582 * 127.38165 * 2 1 4 4 N 1.28903 * 106.83089 * 180.02562 * 3 2 1 5 5 N 1.28424 * 110.34255 * 359.97438 * 4 3 2 6 6 C 1.31541 * 110.49728 * 0.02562 * 5 4 3 7 7 S 1.76201 * 126.44793 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00336 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.47178 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46913 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46913 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46825 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00272 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99889 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99993 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47151 * 60.00016 * 16 14 12 18 18 H 1.48503 * 109.47000 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47101 * 299.99956 * 16 14 12 20 20 H 1.08996 * 109.47324 * 269.97466 * 1 2 3 21 21 H 1.09001 * 109.47463 * 29.97452 * 1 2 3 22 22 H 1.09005 * 109.47095 * 149.97622 * 1 2 3 23 23 H 1.09003 * 109.46690 * 299.99685 * 8 7 6 24 24 H 1.08999 * 109.46878 * 59.99682 * 8 7 6 25 25 H 1.09003 * 109.46809 * 299.99314 * 9 8 7 26 26 H 1.08996 * 109.47218 * 59.99836 * 9 8 7 27 27 H 1.09003 * 109.46651 * 299.99201 * 10 9 8 28 28 H 1.08999 * 109.47182 * 59.99359 * 10 9 8 29 29 H 1.09003 * 109.46809 * 299.99104 * 11 10 9 30 30 H 1.08996 * 109.47218 * 59.99626 * 11 10 9 31 31 H 0.96999 * 120.00242 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3185 1.1171 0.0000 4 7 3.5255 0.6646 -0.0006 5 7 3.5209 -0.6196 -0.0004 6 6 2.2871 -1.0758 -0.0002 7 16 1.7967 -2.7682 0.0007 8 6 3.4213 -3.5662 0.0005 9 6 3.2430 -5.0858 0.0006 10 6 4.6163 -5.7604 0.0011 11 6 4.4381 -7.2799 0.0018 12 6 5.7907 -7.9443 0.0016 13 1 6.6877 -7.3429 0.0007 14 6 5.8831 -9.3201 0.0028 15 7 4.7907 -10.0524 0.0045 16 14 7.5597 -10.1436 0.0018 17 1 8.3138 -9.7325 1.2132 18 1 7.3867 -11.6185 0.0039 19 1 8.3114 -9.7346 -1.2118 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 3.9736 -3.2656 -0.8899 24 1 3.9742 -3.2648 0.8901 25 1 2.6906 -5.3867 0.8908 26 1 2.6902 -5.3868 -0.8892 27 1 5.1692 -5.4595 -0.8889 28 1 5.1688 -5.4592 0.8911 29 1 3.8855 -7.5805 0.8920 30 1 3.8855 -7.5814 -0.8880 31 1 4.8556 -11.0202 0.0049 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385255791.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:08 Heat of formation + Delta-G solvation = 92.254442 kcal Electronic energy + Delta-G solvation = -14220.008321 eV Core-core repulsion = 11664.855470 eV Total energy + Delta-G solvation = -2555.152851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.03836 -35.52292 -35.25477 -32.75312 -32.37529 -29.61617 -28.59159 -25.45542 -23.84889 -23.28199 -21.94365 -20.21588 -18.23980 -17.00702 -16.95356 -16.23471 -15.29360 -15.09164 -14.46463 -14.25545 -14.13053 -13.08720 -13.01771 -12.87702 -12.46989 -12.13032 -11.74049 -11.38037 -11.31367 -11.04744 -10.95230 -10.76110 -10.66514 -10.54335 -10.48365 -9.75188 -9.36003 -9.09696 -8.36279 -8.22234 -6.01596 -4.04045 0.52968 0.65355 1.75210 1.90094 2.02894 3.33378 3.37622 3.40460 3.90998 4.45112 4.52027 4.56207 4.84947 4.99757 5.01440 5.10565 5.14844 5.34458 5.59286 5.71321 5.83912 5.99232 6.26026 6.61581 6.77585 7.05263 7.64501 7.77681 7.97952 8.20489 8.40289 9.02900 9.60286 11.09682 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.061038 B = 0.003559 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.617157 B = 7865.881280 C = 8288.145336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.370 5.370 3 N -0.090 5.090 4 N -0.032 5.032 5 N -0.333 5.333 6 C 0.218 3.782 7 S 0.021 5.979 8 C -0.100 4.100 9 C -0.107 4.107 10 C -0.103 4.103 11 C 0.021 3.979 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 16.753 -0.055 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.170 5.170 3 N -0.077 5.077 4 N -0.028 5.028 5 N -0.189 5.189 6 C -0.166 4.166 7 S 0.248 5.752 8 C -0.248 4.248 9 C -0.146 4.146 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.112 0.888 21 H 0.123 0.877 22 H 0.121 0.879 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.697 17.189 -0.054 20.792 hybrid contribution 1.174 -0.401 0.006 1.241 sum -10.523 16.788 -0.049 19.814 Atomic orbital electron populations 1.22250 0.71880 1.06093 1.05194 1.51481 1.09675 1.03302 1.52509 1.82444 0.95094 1.07419 1.22771 1.77863 1.12731 1.02962 1.09280 1.74995 1.16651 1.03133 1.24157 1.27958 0.89805 0.98517 1.00360 1.85887 1.14837 0.84094 1.90386 1.24014 0.93235 0.99756 1.07829 1.21567 1.01375 0.88647 1.03046 1.21644 0.92677 0.98983 1.00992 1.19102 0.97145 0.88009 0.97331 1.21225 0.92745 0.91395 1.50720 0.92655 1.25022 0.96530 0.97594 0.95283 1.69947 1.27396 1.05421 1.50790 0.86655 0.84448 0.78220 0.78676 1.20214 1.21306 1.20208 0.88777 0.87714 0.87943 0.88090 0.88070 0.91133 0.91133 0.92840 0.92838 0.96497 0.96505 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.40 59.85 0.68 1.15 16 2 N -0.37 -4.05 4.09 -68.10 -0.28 -4.33 16 3 N -0.09 -1.23 13.93 60.35 0.84 -0.39 16 4 N -0.03 -0.51 13.38 60.35 0.81 0.30 16 5 N -0.33 -5.07 11.57 30.50 0.35 -4.72 16 6 C 0.22 2.74 8.15 -89.18 -0.73 2.01 16 7 S 0.02 0.22 21.79 -107.50 -2.34 -2.12 16 8 C -0.10 -1.26 5.23 37.16 0.19 -1.07 16 9 C -0.11 -1.57 5.22 -26.73 -0.14 -1.71 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.10 0.39 7.85 -51.93 -0.41 -0.02 16 23 H 0.10 1.30 8.14 -51.91 -0.42 0.87 16 24 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 288.92 15.07 4.35 4.35 Total: -1.00 -32.22 288.92 -5.40 -37.62 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -4.18 Total: -6.66 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.68 Total: -14.67 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 2.46 Total: -34.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.34 Total: -2.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.22 -5.40 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255791.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.875 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds