Wall clock time and date at job start Mon Mar 30 2020 03:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34782 * 125.64189 * 204.10422 * 5 4 2 7 7 O 1.21439 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.48832 * 119.99563 * 180.02562 * 6 5 4 9 9 O 1.21498 * 120.00456 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99608 * 180.02562 * 8 6 5 11 11 C 1.36126 * 119.99977 * 179.97438 * 10 8 6 12 12 H 1.07994 * 119.99813 * 359.97438 * 11 10 8 13 13 C 1.39580 * 120.00272 * 180.02562 * 11 10 8 14 14 N 1.31019 * 120.00056 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00156 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47034 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47168 * 119.99938 * 15 13 11 18 18 H 1.48501 * 109.47053 * 239.99760 * 15 13 11 19 19 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 20 20 C 1.54325 * 107.27065 * 358.94051 * 19 5 4 21 21 H 1.08999 * 110.87305 * 96.24314 * 20 19 5 22 22 O 1.42901 * 110.72114 * 219.44659 * 20 19 5 23 23 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 24 24 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 25 25 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 26 26 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 27 27 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 28 28 H 0.97000 * 120.00679 * 359.97438 * 10 8 6 29 29 H 0.97001 * 120.00027 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.88350 * 239.52260 * 19 5 4 31 31 H 1.08998 * 109.88602 * 118.35926 * 19 5 4 32 32 H 0.96698 * 113.99595 * 293.52017 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4477 -1.5613 -1.5943 7 8 4.3004 -1.5000 -2.7982 8 6 5.7547 -1.9888 -1.0252 9 8 5.9019 -2.0506 0.1793 10 7 6.7754 -2.3066 -1.8459 11 6 7.9710 -2.6971 -1.3254 12 1 8.1018 -2.7520 -0.2549 13 6 9.0283 -3.0257 -2.1754 14 7 8.8699 -2.9586 -3.4743 15 14 10.6693 -3.5610 -1.4612 16 1 10.5898 -3.5533 0.0216 17 1 10.9910 -4.9317 -1.9331 18 1 11.7317 -2.6228 -1.9043 19 6 3.4675 -1.2742 0.6958 20 6 2.0862 -0.8080 1.2021 21 1 1.4451 -1.6615 1.4229 22 8 2.2252 0.0284 2.3524 23 1 -0.3633 0.4521 0.9229 24 1 -0.3633 0.5732 -0.8529 25 1 -0.3633 -1.0253 -0.0699 26 1 1.4518 -1.6703 -1.4025 27 1 2.1559 -0.1719 -2.0837 28 1 6.6581 -2.2569 -2.8075 29 1 9.6045 -3.1873 -4.0649 30 1 4.2427 -0.5998 1.0597 31 1 3.6651 -2.2894 1.0398 32 1 2.5696 -0.4288 3.1318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388435065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:38 Heat of formation + Delta-G solvation = -119.159981 kcal Electronic energy + Delta-G solvation = -17544.093161 eV Core-core repulsion = 14504.727071 eV Total energy + Delta-G solvation = -3039.366090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01841 -38.35645 -37.00625 -35.45609 -34.26561 -32.54446 -31.38991 -28.49985 -27.05215 -25.54680 -23.33097 -21.72240 -20.40253 -18.97153 -18.16737 -17.46893 -16.60608 -16.17741 -15.54096 -14.93323 -14.67009 -14.23286 -13.84048 -13.71547 -13.22450 -13.12065 -12.91097 -12.44590 -12.28231 -11.98664 -11.79907 -11.58148 -11.23505 -11.19576 -10.54695 -10.46850 -10.42062 -10.26886 -10.13848 -9.74221 -8.37186 -8.22193 -8.21135 -6.68291 -4.00660 2.41392 3.08892 3.12631 3.17785 3.26036 4.00600 4.10761 4.26269 4.36536 4.59344 4.86796 5.01110 5.16160 5.17661 5.34760 5.40642 5.57863 5.70622 5.79883 5.95633 6.02138 6.05130 6.15517 6.20768 6.59225 7.29782 7.55008 7.69559 7.78661 8.26733 8.55541 8.94282 9.30395 9.83191 10.46729 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.005372 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.487774 B = 5210.948897 C = 5737.341685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.110 3.890 5 N -0.601 5.601 6 C 0.528 3.472 7 O -0.545 6.545 8 C 0.397 3.603 9 O -0.592 6.592 10 N -0.500 5.500 11 C -0.305 4.305 12 H 0.113 0.887 13 C 0.031 3.969 14 N -0.869 5.869 15 Si 0.939 3.061 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.089 3.911 20 C 0.090 3.910 21 H 0.072 0.928 22 O -0.557 6.557 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.404 0.596 29 H 0.280 0.720 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 2.996 6.661 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.013 4.013 5 N -0.338 5.338 6 C 0.315 3.685 7 O -0.422 6.422 8 C 0.181 3.819 9 O -0.480 6.480 10 N -0.134 5.134 11 C -0.436 4.436 12 H 0.131 0.869 13 C -0.176 4.176 14 N -0.507 5.507 15 Si 0.764 3.236 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.035 4.035 20 C 0.030 3.970 21 H 0.090 0.910 22 O -0.363 6.363 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.240 0.760 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -12.263 3.373 6.151 14.128 hybrid contribution 0.981 -0.697 0.021 1.203 sum -11.282 2.677 6.172 13.136 Atomic orbital electron populations 1.21685 0.93388 1.02139 1.02382 1.22383 0.96305 1.00319 0.92801 0.88846 1.22310 0.83289 0.98169 0.97505 1.47976 1.11494 1.67127 1.07173 1.20536 0.85051 0.77268 0.85650 1.90694 1.83356 1.53545 1.14584 1.18824 0.85095 0.90558 0.87380 1.90558 1.82855 1.60797 1.13836 1.41557 1.09633 1.52297 1.09893 1.19921 0.87096 1.41558 0.94980 0.86918 1.25591 1.00629 0.96421 0.94971 1.69495 1.34162 1.44303 1.02719 0.85662 0.80036 0.78277 0.79601 1.18725 1.20280 1.20275 1.22739 0.97278 1.03267 0.80197 1.23031 0.95137 0.92676 0.86145 0.90982 1.86499 1.88097 1.39853 1.21812 0.91783 0.92077 0.92365 0.91270 0.89958 0.76021 0.90951 0.89528 0.90366 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 37.16 0.35 -0.89 16 2 C -0.10 -1.17 3.36 -88.47 -0.30 -1.47 16 3 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.11 1.57 6.38 -2.52 -0.02 1.55 16 5 N -0.60 -11.07 3.33 -171.26 -0.57 -11.63 16 6 C 0.53 12.01 7.89 -11.87 -0.09 11.91 16 7 O -0.54 -13.26 16.72 5.42 0.09 -13.17 16 8 C 0.40 10.14 7.78 -11.88 -0.09 10.05 16 9 O -0.59 -15.62 13.67 5.37 0.07 -15.55 16 10 N -0.50 -13.49 5.25 -11.59 -0.06 -13.55 16 11 C -0.30 -8.41 9.67 -15.15 -0.15 -8.55 16 12 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 13 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 14 N -0.87 -23.36 13.03 55.53 0.72 -22.63 16 15 Si 0.94 20.04 29.56 -169.99 -5.02 15.01 16 16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.09 1.43 5.26 -3.07 -0.02 1.41 16 20 C 0.09 1.08 3.80 -24.90 -0.09 0.99 16 21 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 22 O -0.56 -6.44 13.39 -35.23 -0.47 -6.91 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 26 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 27 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 28 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 31 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 32 H 0.38 2.89 9.12 45.56 0.42 3.30 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -31.70 278.87 -4.66 -36.36 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -3.12 Total: 12.16 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: -0.51 Total: 15.70 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.09 Total: -47.82 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.31 Total: -35.63 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.70 -4.66 -36.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388435065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.796 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds