Wall clock time and date at job start Mon Mar 30 2020 03:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34782 * 125.64189 * 204.10422 * 5 4 2 7 7 O 1.21439 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.48832 * 119.99563 * 180.02562 * 6 5 4 9 9 O 1.21498 * 120.00456 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99608 * 180.02562 * 8 6 5 11 11 C 1.36126 * 119.99977 * 179.97438 * 10 8 6 12 12 H 1.07994 * 119.99813 * 359.97438 * 11 10 8 13 13 C 1.39580 * 120.00272 * 180.02562 * 11 10 8 14 14 N 1.31019 * 120.00056 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00156 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47034 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47168 * 119.99938 * 15 13 11 18 18 H 1.48501 * 109.47053 * 239.99760 * 15 13 11 19 19 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 20 20 C 1.54325 * 107.27065 * 358.94051 * 19 5 4 21 21 H 1.08999 * 110.87305 * 96.24314 * 20 19 5 22 22 O 1.42901 * 110.72114 * 219.44659 * 20 19 5 23 23 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 24 24 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 25 25 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 26 26 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 27 27 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 28 28 H 0.97000 * 120.00679 * 359.97438 * 10 8 6 29 29 H 0.97001 * 120.00027 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.88350 * 239.52260 * 19 5 4 31 31 H 1.08998 * 109.88602 * 118.35926 * 19 5 4 32 32 H 0.96698 * 113.99595 * 293.52017 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4477 -1.5613 -1.5943 7 8 4.3004 -1.5000 -2.7982 8 6 5.7547 -1.9888 -1.0252 9 8 5.9019 -2.0506 0.1793 10 7 6.7754 -2.3066 -1.8459 11 6 7.9710 -2.6971 -1.3254 12 1 8.1018 -2.7520 -0.2549 13 6 9.0283 -3.0257 -2.1754 14 7 8.8699 -2.9586 -3.4743 15 14 10.6693 -3.5610 -1.4612 16 1 10.5898 -3.5533 0.0216 17 1 10.9910 -4.9317 -1.9331 18 1 11.7317 -2.6228 -1.9043 19 6 3.4675 -1.2742 0.6958 20 6 2.0862 -0.8080 1.2021 21 1 1.4451 -1.6615 1.4229 22 8 2.2252 0.0284 2.3524 23 1 -0.3633 0.4521 0.9229 24 1 -0.3633 0.5732 -0.8529 25 1 -0.3633 -1.0253 -0.0699 26 1 1.4518 -1.6703 -1.4025 27 1 2.1559 -0.1719 -2.0837 28 1 6.6581 -2.2569 -2.8075 29 1 9.6045 -3.1873 -4.0649 30 1 4.2427 -0.5998 1.0597 31 1 3.6651 -2.2894 1.0398 32 1 2.5696 -0.4288 3.1318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388435065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:38 Heat of formation + Delta-G solvation = -145.378726 kcal Electronic energy + Delta-G solvation = -17545.230091 eV Core-core repulsion = 14504.727071 eV Total energy + Delta-G solvation = -3040.503020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61495 -39.89101 -38.80620 -36.71934 -36.15723 -33.82369 -33.35671 -29.72824 -28.50907 -27.27058 -24.78135 -23.24373 -21.43460 -20.82035 -20.10331 -18.57431 -18.24439 -17.84450 -17.09883 -16.79714 -16.16045 -15.82988 -15.32548 -15.12364 -14.74572 -14.51449 -14.09574 -13.87606 -13.69747 -13.65430 -13.00439 -12.92611 -12.63182 -12.56512 -12.22578 -12.09416 -12.06015 -11.69094 -11.40550 -11.18425 -10.30107 -10.15345 -9.84983 -8.67673 -6.12577 0.53543 1.39090 1.44516 1.52895 1.64093 2.25386 2.31253 2.93961 3.12210 3.22785 3.48247 3.51600 3.95345 4.03762 4.16973 4.33046 4.50902 4.57368 4.72868 4.84569 4.86759 5.02669 5.17232 5.23111 5.23770 5.40149 5.66473 6.08518 6.27897 6.69298 6.82839 6.92464 7.24887 7.76811 8.48645 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.005372 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.487774 B = 5210.948897 C = 5737.341685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.103 3.897 5 N -0.594 5.594 6 C 0.526 3.474 7 O -0.568 6.568 8 C 0.391 3.609 9 O -0.606 6.606 10 N -0.512 5.512 11 C -0.344 4.344 12 H 0.100 0.900 13 C -0.005 4.005 14 N -0.897 5.897 15 Si 1.012 2.988 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.266 1.266 19 C 0.083 3.917 20 C 0.106 3.894 21 H 0.103 0.897 22 O -0.565 6.565 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.400 0.600 29 H 0.289 0.711 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 2.903 7.588 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.329 5.329 6 C 0.312 3.688 7 O -0.448 6.448 8 C 0.176 3.824 9 O -0.495 6.495 10 N -0.146 5.146 11 C -0.473 4.473 12 H 0.118 0.882 13 C -0.209 4.209 14 N -0.535 5.535 15 Si 0.832 3.168 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.191 1.191 19 C -0.040 4.040 20 C 0.046 3.954 21 H 0.121 0.879 22 O -0.373 6.373 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.234 0.766 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.434 3.293 7.115 15.554 hybrid contribution 1.246 -0.623 -0.211 1.408 sum -12.188 2.670 6.904 14.260 Atomic orbital electron populations 1.21660 0.90495 1.03414 1.03288 1.22379 0.98426 0.99047 0.91234 0.90005 1.22681 0.81135 0.99383 0.98622 1.48063 1.11996 1.64764 1.08028 1.19959 0.85102 0.78058 0.85683 1.90673 1.83725 1.55086 1.15283 1.19442 0.86051 0.89629 0.87274 1.90527 1.83546 1.61021 1.14379 1.41656 1.10173 1.53092 1.09682 1.20019 0.88291 1.44214 0.94790 0.88235 1.26565 1.03840 0.95368 0.95156 1.69563 1.35694 1.44337 1.03886 0.84617 0.75083 0.78360 0.78692 1.18694 1.18998 1.19112 1.22915 0.99788 1.02496 0.78787 1.22964 0.92421 0.93614 0.86393 0.87903 1.86471 1.88062 1.40466 1.22317 0.91019 0.91065 0.90931 0.88995 0.90445 0.76604 0.90080 0.91951 0.91102 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.31 71.98 0.67 -1.18 16 2 C -0.09 -1.94 3.36 -9.40 -0.03 -1.97 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.10 2.76 6.38 86.86 0.55 3.31 16 5 N -0.59 -21.69 3.33 -814.06 -2.71 -24.40 16 6 C 0.53 24.43 7.89 87.08 0.69 25.12 16 7 O -0.57 -28.22 16.72 -3.52 -0.06 -28.28 16 8 C 0.39 20.66 7.78 87.08 0.68 21.33 16 9 O -0.61 -32.93 13.67 -3.71 -0.05 -32.98 16 10 N -0.51 -28.73 5.25 -308.88 -1.62 -30.35 16 11 C -0.34 -19.50 9.67 84.35 0.82 -18.68 16 12 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 13 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 14 N -0.90 -48.69 13.03 21.76 0.28 -48.41 16 15 Si 1.01 40.89 29.56 68.60 2.03 42.92 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 19 C 0.08 2.64 5.26 86.73 0.46 3.09 16 20 C 0.11 2.27 3.80 31.78 0.12 2.40 16 21 H 0.10 1.67 8.04 -2.39 -0.02 1.65 16 22 O -0.57 -11.61 13.39 -148.98 -1.99 -13.61 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.85 8.07 -2.39 -0.02 0.83 16 26 H 0.09 2.11 7.98 -2.39 -0.02 2.09 16 27 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 28 H 0.40 22.76 7.35 -92.71 -0.68 22.08 16 29 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 30 H 0.06 2.28 7.49 -2.39 -0.02 2.26 16 31 H 0.07 2.34 7.69 -2.39 -0.02 2.32 16 32 H 0.40 5.05 9.12 -74.06 -0.68 4.38 16 Total: -1.00 -69.62 278.87 0.10 -69.52 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.20 Total: 31.96 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 4.42 Total: 33.62 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -4.04 Total: -103.16 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -2.10 Total: -74.86 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -69.62 0.10 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388435065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.859 kcal (2) G-P(sol) polarization free energy of solvation -69.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds