Wall clock time and date at job start Mon Mar 30 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.64092 * 2 1 4 4 C 1.54325 * 110.72022 * 236.66659 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.45263 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21440 * 119.99952 * 0.02562 * 6 5 4 8 8 C 1.48834 * 119.99889 * 180.02562 * 6 5 4 9 9 O 1.21498 * 119.99809 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00134 * 179.97438 * 8 6 5 11 11 C 1.36117 * 120.00126 * 179.97438 * 10 8 6 12 12 H 1.08002 * 119.99548 * 0.02562 * 11 10 8 13 13 C 1.39583 * 120.00126 * 180.02562 * 11 10 8 14 14 N 1.31015 * 119.99835 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99938 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47115 * 90.00296 * 15 13 11 17 17 H 1.48503 * 109.47414 * 210.00159 * 15 13 11 18 18 H 1.48505 * 109.47197 * 330.00368 * 15 13 11 19 19 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 20 20 C 1.54908 * 104.92961 * 24.15407 * 19 5 4 21 21 H 1.08999 * 111.00647 * 204.85975 * 20 19 5 22 22 O 1.42902 * 111.00325 * 81.05136 * 20 19 5 23 23 H 1.08995 * 109.46983 * 296.85562 * 1 2 3 24 24 H 1.09001 * 109.47276 * 56.86026 * 1 2 3 25 25 H 1.09004 * 109.46998 * 176.85914 * 1 2 3 26 26 H 1.09004 * 109.88239 * 338.86059 * 4 2 1 27 27 H 1.08995 * 109.88239 * 99.86981 * 4 2 1 28 28 H 0.96998 * 119.99762 * 0.02562 * 10 8 6 29 29 H 0.97003 * 119.99465 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.36696 * 265.26054 * 19 5 4 31 31 H 1.08995 * 110.36608 * 143.04891 * 19 5 4 32 32 H 0.96700 * 114.00230 * 61.44969 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2466 -1.5538 -0.7364 6 6 3.9953 -2.3892 -1.4834 7 8 3.7236 -2.5656 -2.6539 8 6 5.1550 -3.0955 -0.8740 9 8 5.4270 -2.9186 0.2968 10 7 5.9034 -3.9313 -1.6210 11 6 6.9643 -4.5768 -1.0637 12 1 7.2061 -4.4196 -0.0229 13 6 7.7397 -5.4420 -1.8374 14 7 8.7605 -6.0637 -1.3009 15 14 7.3210 -5.7145 -3.6373 16 1 8.0449 -4.7205 -4.4699 17 1 7.7272 -7.0855 -4.0381 18 1 5.8579 -5.5540 -3.8350 19 6 3.4633 -1.2486 0.6896 20 6 2.0790 -0.7934 1.2151 21 1 2.1850 -0.1483 2.0873 22 8 1.2485 -1.9179 1.5112 23 1 -0.3633 0.4642 0.9168 24 1 -0.3634 0.5618 -0.8605 25 1 -0.3633 -1.0262 -0.0563 26 1 1.3130 -1.4785 -1.5751 27 1 2.3715 -0.1059 -1.9986 28 1 5.6864 -4.0722 -2.5558 29 1 9.2991 -6.6652 -1.8385 30 1 4.1932 -0.4465 0.7992 31 1 3.7969 -2.1394 1.2217 32 1 1.6023 -2.4979 2.1993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388435070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:41 Heat of formation + Delta-G solvation = -109.646684 kcal Electronic energy + Delta-G solvation = -17739.268855 eV Core-core repulsion = 14700.315292 eV Total energy + Delta-G solvation = -3038.953563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12845 -38.49869 -37.11904 -35.19659 -34.28505 -32.55272 -31.85355 -28.74856 -27.08309 -25.59684 -23.30387 -21.68356 -20.13787 -19.34896 -18.63751 -17.51622 -16.30660 -16.09069 -15.75545 -15.12609 -14.58303 -14.37702 -14.08726 -13.43434 -13.37651 -13.01810 -12.85756 -12.61491 -12.40334 -12.21423 -11.99603 -11.47383 -11.29726 -11.10009 -10.75114 -10.65055 -10.37499 -10.13788 -10.08498 -9.78180 -8.46520 -8.38143 -8.27188 -6.60371 -4.02026 2.29635 3.03038 3.06398 3.09969 3.13360 3.94845 4.03141 4.12996 4.39336 4.57376 4.72842 4.82137 5.10890 5.23707 5.33425 5.43873 5.56572 5.66034 5.70200 5.87286 5.94204 5.98298 6.14178 6.28212 6.53033 7.25246 7.61649 7.67908 7.86851 8.18335 8.48940 8.72707 9.17683 9.59675 10.49613 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.045967 B = 0.005917 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.985497 B = 4730.682516 C = 5129.015414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.094 0.906 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.527 3.473 7 O -0.551 6.551 8 C 0.409 3.591 9 O -0.576 6.576 10 N -0.527 5.527 11 C -0.309 4.309 12 H 0.128 0.872 13 C 0.053 3.947 14 N -0.849 5.849 15 Si 0.875 3.125 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.259 1.259 19 C 0.073 3.927 20 C 0.088 3.912 21 H 0.078 0.922 22 O -0.555 6.555 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.384 0.616 29 H 0.281 0.719 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 10.085 2.531 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.112 0.888 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.314 3.686 7 O -0.429 6.429 8 C 0.193 3.807 9 O -0.462 6.462 10 N -0.163 5.163 11 C -0.438 4.438 12 H 0.145 0.855 13 C -0.155 4.155 14 N -0.486 5.486 15 Si 0.699 3.301 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.184 1.184 19 C -0.050 4.050 20 C 0.028 3.972 21 H 0.095 0.905 22 O -0.361 6.361 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.218 0.782 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.688 10.161 2.122 16.393 hybrid contribution 0.292 -0.513 -0.964 1.131 sum -12.396 9.647 1.158 15.750 Atomic orbital electron populations 1.21556 0.93161 1.02908 1.01352 1.22322 0.97392 0.98498 0.93408 0.88771 1.22042 0.88005 0.94537 0.96310 1.48058 1.29319 1.43885 1.11686 1.20375 0.83722 0.79015 0.85511 1.90680 1.71525 1.64147 1.16532 1.18715 0.86902 0.87399 0.87641 1.90541 1.72136 1.67708 1.15847 1.41817 1.25551 1.36959 1.11989 1.19545 1.03128 1.21354 0.99786 0.85485 1.25220 0.95359 0.95733 0.99183 1.69441 1.15791 1.25998 1.37414 0.86689 0.79951 0.79416 0.83997 1.18872 1.19485 1.18426 1.23309 0.96240 1.03544 0.81916 1.23055 0.89512 0.88015 0.96619 0.90462 1.86445 1.48689 1.38969 1.62037 0.92360 0.92775 0.91398 0.91134 0.91580 0.78153 0.90768 0.90690 0.87123 0.77011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.76 37.16 0.33 -0.94 16 2 C -0.10 -1.05 3.48 -88.78 -0.31 -1.36 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.11 1.63 6.49 -2.92 -0.02 1.61 16 5 N -0.59 -10.61 3.34 -171.04 -0.57 -11.18 16 6 C 0.53 11.56 7.90 -11.88 -0.09 11.47 16 7 O -0.55 -12.90 16.80 5.42 0.09 -12.81 16 8 C 0.41 10.04 7.78 -11.87 -0.09 9.94 16 9 O -0.58 -14.77 13.33 5.37 0.07 -14.70 16 10 N -0.53 -13.47 5.06 -11.59 -0.06 -13.53 16 11 C -0.31 -8.61 10.16 -15.15 -0.15 -8.76 16 12 H 0.13 3.92 7.37 -52.49 -0.39 3.53 16 13 C 0.05 1.43 5.51 -17.40 -0.10 1.33 16 14 N -0.85 -23.59 13.94 55.53 0.77 -22.81 16 15 Si 0.87 19.50 27.74 -169.99 -4.72 14.79 16 16 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.26 -5.66 6.53 56.52 0.37 -5.29 16 19 C 0.07 1.10 5.78 -2.53 -0.01 1.08 16 20 C 0.09 0.99 4.17 -24.58 -0.10 0.89 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 O -0.56 -6.63 12.22 -35.23 -0.43 -7.06 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.76 7.44 -51.93 -0.39 0.38 16 26 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.38 9.32 5.22 -40.82 -0.21 9.11 16 29 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.90 6.14 -51.93 -0.32 1.58 16 32 H 0.38 3.38 9.11 45.56 0.42 3.80 16 LS Contribution 273.38 15.07 4.12 4.12 Total: -1.00 -31.98 273.38 -4.27 -36.25 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -3.00 Total: 11.68 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -0.56 Total: 15.26 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.14 Total: -47.52 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.27 Total: -34.57 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.72 Total: 14.79 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.98 -4.27 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388435070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.399 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds