Wall clock time and date at job start Mon Mar 30 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.64092 * 2 1 4 4 C 1.54325 * 110.72022 * 236.66659 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.45263 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21440 * 119.99952 * 0.02562 * 6 5 4 8 8 C 1.48834 * 119.99889 * 180.02562 * 6 5 4 9 9 O 1.21498 * 119.99809 * 359.97438 * 8 6 5 10 10 N 1.34779 * 120.00134 * 179.97438 * 8 6 5 11 11 C 1.36117 * 120.00126 * 179.97438 * 10 8 6 12 12 H 1.08002 * 119.99548 * 0.02562 * 11 10 8 13 13 C 1.39583 * 120.00126 * 180.02562 * 11 10 8 14 14 N 1.31015 * 119.99835 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99938 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47115 * 90.00296 * 15 13 11 17 17 H 1.48503 * 109.47414 * 210.00159 * 15 13 11 18 18 H 1.48505 * 109.47197 * 330.00368 * 15 13 11 19 19 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 20 20 C 1.54908 * 104.92961 * 24.15407 * 19 5 4 21 21 H 1.08999 * 111.00647 * 204.85975 * 20 19 5 22 22 O 1.42902 * 111.00325 * 81.05136 * 20 19 5 23 23 H 1.08995 * 109.46983 * 296.85562 * 1 2 3 24 24 H 1.09001 * 109.47276 * 56.86026 * 1 2 3 25 25 H 1.09004 * 109.46998 * 176.85914 * 1 2 3 26 26 H 1.09004 * 109.88239 * 338.86059 * 4 2 1 27 27 H 1.08995 * 109.88239 * 99.86981 * 4 2 1 28 28 H 0.96998 * 119.99762 * 0.02562 * 10 8 6 29 29 H 0.97003 * 119.99465 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.36696 * 265.26054 * 19 5 4 31 31 H 1.08995 * 110.36608 * 143.04891 * 19 5 4 32 32 H 0.96700 * 114.00230 * 61.44969 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2466 -1.5538 -0.7364 6 6 3.9953 -2.3892 -1.4834 7 8 3.7236 -2.5656 -2.6539 8 6 5.1550 -3.0955 -0.8740 9 8 5.4270 -2.9186 0.2968 10 7 5.9034 -3.9313 -1.6210 11 6 6.9643 -4.5768 -1.0637 12 1 7.2061 -4.4196 -0.0229 13 6 7.7397 -5.4420 -1.8374 14 7 8.7605 -6.0637 -1.3009 15 14 7.3210 -5.7145 -3.6373 16 1 8.0449 -4.7205 -4.4699 17 1 7.7272 -7.0855 -4.0381 18 1 5.8579 -5.5540 -3.8350 19 6 3.4633 -1.2486 0.6896 20 6 2.0790 -0.7934 1.2151 21 1 2.1850 -0.1483 2.0873 22 8 1.2485 -1.9179 1.5112 23 1 -0.3633 0.4642 0.9168 24 1 -0.3634 0.5618 -0.8605 25 1 -0.3633 -1.0262 -0.0563 26 1 1.3130 -1.4785 -1.5751 27 1 2.3715 -0.1059 -1.9986 28 1 5.6864 -4.0722 -2.5558 29 1 9.2991 -6.6652 -1.8385 30 1 4.1932 -0.4465 0.7992 31 1 3.7969 -2.1394 1.2217 32 1 1.6023 -2.4979 2.1993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388435070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:41 Heat of formation + Delta-G solvation = -136.414205 kcal Electronic energy + Delta-G solvation = -17740.429582 eV Core-core repulsion = 14700.315292 eV Total energy + Delta-G solvation = -3040.114290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68412 -39.99090 -38.86213 -36.59843 -36.00491 -34.06892 -33.54339 -29.90134 -28.58309 -27.25414 -24.69363 -23.18305 -21.36838 -21.08296 -20.31237 -18.82953 -17.94687 -17.72337 -17.16109 -16.97324 -15.89983 -15.82604 -15.45665 -15.05505 -14.78012 -14.57843 -14.43437 -14.28860 -13.69480 -13.37689 -13.16557 -13.08209 -12.58473 -12.56503 -12.26769 -12.02366 -11.89363 -11.72738 -11.47367 -11.10491 -10.49675 -10.18549 -9.79092 -8.64593 -6.17915 0.47496 1.26847 1.30240 1.36319 1.55546 2.07959 2.23341 2.83735 3.03902 3.19377 3.49245 3.61899 3.74685 3.92612 4.24525 4.49187 4.59235 4.61287 4.78619 4.80244 4.85180 5.10755 5.15429 5.21327 5.26506 5.51456 5.71844 6.09366 6.25894 6.53146 6.78498 6.85072 7.11951 7.58896 8.49755 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.045967 B = 0.005917 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.985497 B = 4730.682516 C = 5129.015414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 H 0.124 0.876 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.526 3.474 7 O -0.569 6.569 8 C 0.410 3.590 9 O -0.590 6.590 10 N -0.533 5.533 11 C -0.337 4.337 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.890 5.890 15 Si 0.945 3.055 16 H -0.252 1.252 17 H -0.255 1.255 18 H -0.252 1.252 19 C 0.063 3.937 20 C 0.099 3.901 21 H 0.116 0.884 22 O -0.570 6.570 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.391 0.609 29 H 0.291 0.709 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.455 11.729 1.806 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.107 4.107 3 H 0.142 0.858 4 C -0.017 4.017 5 N -0.320 5.320 6 C 0.311 3.689 7 O -0.450 6.450 8 C 0.195 3.805 9 O -0.477 6.477 10 N -0.172 5.172 11 C -0.466 4.466 12 H 0.099 0.901 13 C -0.192 4.192 14 N -0.527 5.527 15 Si 0.765 3.235 16 H -0.176 1.176 17 H -0.179 1.179 18 H -0.177 1.177 19 C -0.059 4.059 20 C 0.039 3.961 21 H 0.133 0.867 22 O -0.378 6.378 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.227 0.773 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.564 11.822 1.449 18.815 hybrid contribution 0.797 -0.927 -0.571 1.349 sum -13.767 10.896 0.878 17.579 Atomic orbital electron populations 1.21524 0.91954 1.02071 1.02923 1.22436 0.98207 0.99127 0.90908 0.85796 1.22386 0.86293 0.94478 0.98513 1.48209 1.29020 1.42084 1.12688 1.19754 0.83610 0.80018 0.85516 1.90662 1.72011 1.65252 1.17053 1.19434 0.87123 0.86454 0.87456 1.90535 1.72658 1.67818 1.16685 1.41710 1.25493 1.37608 1.12361 1.19170 1.05278 1.23769 0.98424 0.90086 1.26016 0.94599 0.94550 1.03988 1.69538 1.16830 1.26719 1.39661 0.85641 0.80120 0.80225 0.77558 1.17555 1.17871 1.17680 1.23546 0.99435 1.02789 0.80165 1.23151 0.86693 0.88174 0.98081 0.86658 1.86427 1.48951 1.39640 1.62762 0.90696 0.91325 0.93431 0.92022 0.90605 0.77313 0.89888 0.89733 0.89750 0.75658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.76 71.98 0.63 -1.34 16 2 C -0.09 -1.57 3.48 -9.60 -0.03 -1.60 16 3 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.10 2.76 6.49 86.68 0.56 3.32 16 5 N -0.59 -20.27 3.34 -813.38 -2.71 -22.98 16 6 C 0.53 22.97 7.90 87.08 0.69 23.66 16 7 O -0.57 -26.36 16.80 -3.53 -0.06 -26.42 16 8 C 0.41 20.59 7.78 87.08 0.68 21.26 16 9 O -0.59 -31.25 13.33 -3.71 -0.05 -31.30 16 10 N -0.53 -27.89 5.06 -308.87 -1.56 -29.45 16 11 C -0.34 -19.59 10.16 84.35 0.86 -18.74 16 12 H 0.08 5.34 7.37 -2.91 -0.02 5.32 16 13 C 0.01 0.75 5.51 85.14 0.47 1.22 16 14 N -0.89 -50.64 13.94 21.76 0.30 -50.34 16 15 Si 0.94 39.99 27.74 68.60 1.90 41.89 16 16 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 17 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.25 -10.33 6.53 99.48 0.65 -9.68 16 19 C 0.06 1.80 5.78 86.85 0.50 2.30 16 20 C 0.10 1.91 4.17 31.98 0.13 2.05 16 21 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 22 O -0.57 -12.31 12.22 -148.98 -1.82 -14.13 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.95 7.44 -2.39 -0.02 0.93 16 26 H 0.06 1.76 7.77 -2.38 -0.02 1.74 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.39 19.01 5.22 -92.71 -0.48 18.53 16 29 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.90 6.14 -2.39 -0.01 2.88 16 32 H 0.39 6.33 9.11 -74.06 -0.67 5.66 16 Total: -1.00 -71.43 273.38 0.43 -71.00 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.05 Total: 29.58 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 4.49 Total: 32.13 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.97 Total: -102.77 kcal Atomic # 8 Polarization: -69.91 SS G_CDS: -1.93 Total: -71.84 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.90 Total: 41.89 kcal Total: -71.43 0.43 -71.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388435070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.418 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds