Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00060 * 2 1 4 4 C 1.53006 * 109.47343 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46641 * 64.99694 * 4 3 2 6 6 C 1.42904 * 113.99379 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46888 * 180.02562 * 6 5 4 8 8 N 1.29949 * 126.29094 * 89.97879 * 7 6 5 9 9 O 1.21299 * 110.25253 * 180.02562 * 8 7 6 10 10 C 1.33638 * 109.81146 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54638 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02308 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31126 * 106.90184 * 0.22991 * 10 9 8 21 21 H 1.08995 * 109.47256 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46981 * 300.00329 * 1 2 3 23 23 H 1.09001 * 109.47168 * 59.99758 * 1 2 3 24 24 H 1.09003 * 109.47528 * 59.99645 * 3 2 1 25 25 H 1.09003 * 109.47473 * 299.99799 * 3 2 1 26 26 H 1.09000 * 109.46450 * 305.00186 * 4 3 2 27 27 H 1.08998 * 109.47146 * 184.99935 * 4 3 2 28 28 H 1.08999 * 109.47065 * 60.00659 * 6 5 4 29 29 H 1.08996 * 109.47604 * 300.00443 * 6 5 4 30 30 H 1.09004 * 109.47205 * 150.02402 * 11 10 9 31 31 H 1.08997 * 109.47395 * 30.02894 * 11 10 9 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4186 -1.3215 7 6 5.7215 -0.2251 -2.6411 8 7 5.9700 0.3927 -3.7570 9 8 6.2079 -0.4082 -4.6364 10 6 6.1321 -1.6506 -4.1502 11 6 6.3579 -2.9291 -4.9155 12 6 5.0524 -3.4004 -5.5025 13 1 4.1496 -2.8309 -5.3382 14 6 5.0105 -4.5587 -6.2493 15 7 6.1109 -5.2493 -6.4539 16 14 3.3925 -5.1426 -6.9775 17 1 2.3124 -4.1921 -6.6094 18 1 3.5107 -5.2096 -8.4562 19 1 3.0677 -6.4903 -6.4451 20 7 5.8184 -1.5450 -2.8814 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9785 2.1765 0.0902 28 1 5.7354 -0.2137 -0.5070 29 1 5.8639 1.3944 -1.2591 30 1 6.7496 -3.6913 -4.2420 31 1 7.0737 -2.7507 -5.7178 32 1 6.0814 -6.0644 -6.9789 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395407240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = -28.628376 kcal Electronic energy + Delta-G solvation = -16807.297875 eV Core-core repulsion = 13771.857530 eV Total energy + Delta-G solvation = -3035.440345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.77395 -38.58494 -37.33753 -35.08353 -33.80103 -32.05440 -30.56522 -28.49627 -27.28931 -26.28172 -24.01469 -22.71211 -22.57461 -20.57341 -17.64755 -17.00954 -16.93620 -16.69070 -16.19985 -15.61413 -15.44315 -15.26567 -14.71634 -14.24059 -13.40777 -12.80620 -12.56879 -12.44548 -12.24908 -12.01646 -11.56645 -11.36176 -11.28143 -11.04488 -10.77963 -10.74157 -10.30325 -10.07964 -9.84596 -9.81771 -9.73386 -8.94362 -8.58308 -6.21667 -4.26631 1.88615 2.78353 3.26701 3.34164 3.40824 3.61735 3.66875 3.85829 4.34137 4.40911 4.63690 4.82572 4.99602 5.09363 5.16438 5.18790 5.20356 5.24954 5.30656 5.50165 5.56462 5.58328 5.96646 6.57938 6.69619 6.95870 7.09491 7.14645 7.21640 7.73242 7.95596 8.74375 8.93543 9.38216 10.88874 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.005517 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.203720 B = 5074.432519 C = 6197.724586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.371 6.371 6 C 0.165 3.835 7 C 0.156 3.844 8 N -0.394 5.394 9 O 0.066 5.934 10 C 0.238 3.762 11 C 0.100 3.900 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.495 5.495 21 H 0.087 0.913 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 11.790 12.096 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.289 6.289 6 C 0.087 3.913 7 C -0.117 4.117 8 N -0.107 5.107 9 O 0.009 5.991 10 C 0.020 3.980 11 C 0.062 3.938 12 C -0.561 4.561 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.230 5.230 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.221 12.132 12.225 17.997 hybrid contribution -0.907 -0.152 -0.311 0.970 sum -6.128 11.979 11.914 17.972 Atomic orbital electron populations 1.22749 0.81104 1.03016 0.99650 1.88018 1.19569 1.27003 1.95311 1.22548 0.92293 0.85753 1.00785 1.22540 0.93577 0.97487 0.87652 1.88053 1.20694 1.82141 1.38033 1.20221 0.82628 0.98522 0.89955 1.25184 1.02560 0.87830 0.96174 1.74485 1.20479 1.17247 0.98443 1.85256 1.64087 1.15563 1.34211 1.30186 0.89639 0.89700 0.88452 1.18234 0.99791 0.81398 0.94394 1.20860 0.93015 1.09110 1.33122 0.91933 1.24920 0.97217 0.95919 0.95638 1.69936 1.27023 1.16386 1.39307 0.86296 0.82950 0.78741 0.78712 1.19530 1.20635 1.20629 1.71945 1.21374 1.15395 1.14237 0.89455 0.94338 0.94017 0.91769 0.92370 0.91998 0.91578 0.90183 0.90984 0.91230 0.92279 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.32 10.67 -40.09 -0.43 -5.75 16 3 C 0.06 0.69 6.32 37.16 0.23 0.92 16 4 C 0.06 0.73 6.32 37.16 0.23 0.97 16 5 O -0.37 -6.18 10.29 -40.09 -0.41 -6.59 16 6 C 0.16 2.57 6.56 36.00 0.24 2.81 16 7 C 0.16 3.21 7.85 -156.36 -1.23 1.98 16 8 N -0.39 -8.43 12.16 30.90 0.38 -8.06 16 9 O 0.07 1.49 11.31 18.12 0.20 1.70 16 10 C 0.24 5.60 7.70 -13.06 -0.10 5.50 16 11 C 0.10 2.52 5.60 -29.04 -0.16 2.36 16 12 C -0.52 -14.43 9.09 -34.44 -0.31 -14.74 16 13 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 16 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.50 -11.50 11.55 -9.87 -0.11 -11.62 16 21 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 291.64 15.07 4.40 4.40 Total: -1.00 -32.05 291.64 -4.54 -36.59 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -4.19 Total: -5.57 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.08 Total: 2.94 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 1.00 Total: -43.94 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.64 Total: -10.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.05 -4.54 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395407240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.957 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds