Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00060 * 2 1 4 4 C 1.53006 * 109.47343 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46641 * 64.99694 * 4 3 2 6 6 C 1.42904 * 113.99379 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46888 * 180.02562 * 6 5 4 8 8 N 1.29949 * 126.29094 * 89.97879 * 7 6 5 9 9 O 1.21299 * 110.25253 * 180.02562 * 8 7 6 10 10 C 1.33638 * 109.81146 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54638 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02308 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31126 * 106.90184 * 0.22991 * 10 9 8 21 21 H 1.08995 * 109.47256 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46981 * 300.00329 * 1 2 3 23 23 H 1.09001 * 109.47168 * 59.99758 * 1 2 3 24 24 H 1.09003 * 109.47528 * 59.99645 * 3 2 1 25 25 H 1.09003 * 109.47473 * 299.99799 * 3 2 1 26 26 H 1.09000 * 109.46450 * 305.00186 * 4 3 2 27 27 H 1.08998 * 109.47146 * 184.99935 * 4 3 2 28 28 H 1.08999 * 109.47065 * 60.00659 * 6 5 4 29 29 H 1.08996 * 109.47604 * 300.00443 * 6 5 4 30 30 H 1.09004 * 109.47205 * 150.02402 * 11 10 9 31 31 H 1.08997 * 109.47395 * 30.02894 * 11 10 9 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4186 -1.3215 7 6 5.7215 -0.2251 -2.6411 8 7 5.9700 0.3927 -3.7570 9 8 6.2079 -0.4082 -4.6364 10 6 6.1321 -1.6506 -4.1502 11 6 6.3579 -2.9291 -4.9155 12 6 5.0524 -3.4004 -5.5025 13 1 4.1496 -2.8309 -5.3382 14 6 5.0105 -4.5587 -6.2493 15 7 6.1109 -5.2493 -6.4539 16 14 3.3925 -5.1426 -6.9775 17 1 2.3124 -4.1921 -6.6094 18 1 3.5107 -5.2096 -8.4562 19 1 3.0677 -6.4903 -6.4451 20 7 5.8184 -1.5450 -2.8814 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6887 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9785 2.1765 0.0902 28 1 5.7354 -0.2137 -0.5070 29 1 5.8639 1.3944 -1.2591 30 1 6.7496 -3.6913 -4.2420 31 1 7.0737 -2.7507 -5.7178 32 1 6.0814 -6.0644 -6.9789 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395407240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = -52.802226 kcal Electronic energy + Delta-G solvation = -16808.346132 eV Core-core repulsion = 13771.857530 eV Total energy + Delta-G solvation = -3036.488602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.50035 -39.58611 -38.35740 -36.80210 -35.75100 -33.89826 -31.56152 -30.42175 -28.56046 -27.12448 -26.03953 -24.30047 -23.56235 -22.28284 -19.36843 -18.52184 -18.38186 -17.93358 -17.69567 -16.88931 -16.65471 -16.35134 -16.19769 -15.42080 -15.14949 -14.47726 -14.17901 -13.75641 -13.44881 -13.20286 -13.06778 -12.91787 -12.70881 -12.62317 -12.34524 -12.19595 -12.06608 -11.95695 -11.76776 -10.79673 -10.79175 -10.67560 -10.65682 -8.31771 -6.44705 0.15084 1.12174 1.42185 1.43876 1.56477 1.95628 2.39342 2.44398 2.85140 2.98456 3.08409 3.15819 3.93440 4.09847 4.14904 4.23040 4.39880 4.43667 4.45209 4.54121 4.54688 4.74673 4.78407 4.82798 4.93134 5.09107 5.21529 5.58584 5.87451 6.00966 6.24884 6.59440 7.17170 7.24038 8.79327 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.005517 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.203720 B = 5074.432519 C = 6197.724586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.409 6.409 6 C 0.164 3.836 7 C 0.160 3.840 8 N -0.398 5.398 9 O 0.057 5.943 10 C 0.231 3.769 11 C 0.109 3.891 12 C -0.545 4.545 13 H 0.048 0.952 14 C 0.024 3.976 15 N -0.914 5.914 16 Si 0.969 3.031 17 H -0.275 1.275 18 H -0.268 1.268 19 H -0.272 1.272 20 N -0.513 5.513 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 12.700 13.083 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.019 4.019 4 C -0.019 4.019 5 O -0.328 6.328 6 C 0.087 3.913 7 C -0.114 4.114 8 N -0.112 5.112 9 O 0.003 5.997 10 C 0.013 3.987 11 C 0.071 3.929 12 C -0.584 4.584 13 H 0.066 0.934 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.793 3.207 17 H -0.200 1.200 18 H -0.193 1.193 19 H -0.197 1.197 20 N -0.248 5.248 21 H 0.105 0.895 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.096 13.051 13.201 19.539 hybrid contribution -0.645 -0.372 -0.537 0.917 sum -6.741 12.679 12.665 19.146 Atomic orbital electron populations 1.22897 0.79644 1.03497 1.00958 1.87956 1.21465 1.29052 1.95612 1.22792 0.92007 0.84917 1.02230 1.22916 0.94009 0.99135 0.85875 1.87992 1.20844 1.83165 1.40786 1.20518 0.83036 1.00240 0.87520 1.26121 1.00645 0.86926 0.97687 1.74469 1.21172 1.16925 0.98674 1.85240 1.64459 1.15199 1.34775 1.29805 0.90441 0.89711 0.88764 1.17954 0.98878 0.81980 0.94125 1.21033 0.93412 1.09770 1.34190 0.93351 1.25699 1.00559 0.95749 0.95665 1.70003 1.28765 1.16800 1.39614 0.85334 0.78635 0.78225 0.78479 1.19957 1.19288 1.19691 1.71946 1.21637 1.17186 1.14068 0.89535 0.91741 0.93932 0.88079 0.92988 0.91178 0.88051 0.88444 0.87493 0.92386 0.92383 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.33 10.67 -144.34 -1.54 -12.87 16 3 C 0.06 1.12 6.32 71.98 0.45 1.57 16 4 C 0.06 1.13 6.32 71.98 0.45 1.59 16 5 O -0.41 -12.90 10.29 -144.34 -1.49 -14.39 16 6 C 0.16 4.78 6.56 71.24 0.47 5.24 16 7 C 0.16 6.45 7.85 138.46 1.09 7.54 16 8 N -0.40 -16.83 12.16 -60.31 -0.73 -17.56 16 9 O 0.06 2.60 11.31 74.89 0.85 3.45 16 10 C 0.23 11.05 7.70 88.38 0.68 11.74 16 11 C 0.11 5.62 5.60 29.10 0.16 5.79 16 12 C -0.55 -30.63 9.09 25.60 0.23 -30.40 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.02 1.33 5.46 84.66 0.46 1.79 16 15 N -0.91 -51.40 13.29 21.45 0.28 -51.12 16 16 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 N -0.51 -23.90 11.55 -303.20 -3.50 -27.40 16 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -68.61 291.64 2.26 -66.35 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 1.11 Total: 1.60 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.25 Total: 6.60 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -3.95 Total: -96.08 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -2.18 Total: -23.81 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.61 2.26 -66.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395407240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.548 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds