Wall clock time and date at job start Mon Mar 30 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47604 * 179.97438 * 12 11 10 14 14 C 1.42903 * 114.00537 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.72497 * 330.00516 * 14 13 12 16 16 C 1.53353 * 109.73774 * 209.34746 * 14 13 12 17 17 O 1.42911 * 109.26738 * 188.14228 * 16 14 13 18 18 C 1.42896 * 114.54191 * 64.86117 * 17 16 14 19 19 C 1.53362 * 109.27411 * 295.08659 * 18 17 16 20 20 C 1.51510 * 108.09527 * 52.26042 * 19 18 17 21 21 O 1.20766 * 121.21562 * 131.60252 * 20 19 18 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 26 26 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 27 27 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 28 28 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 29 29 H 1.09004 * 109.46998 * 300.00439 * 12 11 10 30 30 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 31 31 H 1.09000 * 109.50585 * 308.03469 * 16 14 13 32 32 H 1.09003 * 109.50845 * 68.15625 * 16 14 13 33 33 H 1.08994 * 109.50529 * 175.14642 * 18 17 16 34 34 H 1.08994 * 109.50350 * 55.02586 * 18 17 16 35 35 H 1.08993 * 109.74033 * 292.60564 * 19 18 17 36 36 H 1.08998 * 109.73775 * 171.90311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 6 6.0613 -4.0793 -0.0022 13 8 7.4903 -4.0794 -0.0028 14 6 8.0715 -5.3849 -0.0042 15 1 7.4096 -6.0828 0.5085 16 6 9.4319 -5.3469 0.7027 17 8 10.0877 -6.6050 0.5313 18 6 10.4319 -6.9157 -0.8204 19 6 9.1490 -7.0767 -1.6452 20 6 8.2939 -5.8445 -1.4307 21 8 7.8069 -5.2506 -2.3627 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 3.6577 -3.1515 0.8880 26 1 3.6583 -3.1496 -0.8920 27 1 5.9147 -2.1222 -0.8909 28 1 5.9148 -2.1238 0.8891 29 1 5.6979 -4.5936 0.8875 30 1 5.6979 -4.5926 -0.8925 31 1 10.0447 -4.5559 0.2703 32 1 9.2847 -5.1542 1.7654 33 1 11.0004 -7.8452 -0.8467 34 1 11.0337 -6.1083 -1.2374 35 1 8.6074 -7.9628 -1.3144 36 1 9.4000 -7.1710 -2.7017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686522489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:37 Heat of formation + Delta-G solvation = -145.312488 kcal Electronic energy + Delta-G solvation = -17118.748055 eV Core-core repulsion = 14181.788251 eV Total energy + Delta-G solvation = -2936.959805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65637 -38.21520 -37.66236 -34.77557 -32.41519 -32.04939 -30.81754 -28.84875 -24.99304 -24.29214 -24.00367 -21.58045 -20.21631 -19.79632 -17.32700 -17.02589 -16.71506 -16.61840 -16.18425 -15.60825 -15.12438 -14.51127 -14.38558 -14.13528 -13.80092 -13.41133 -12.88970 -12.70149 -12.43952 -11.99382 -11.96114 -11.69699 -11.44851 -11.21606 -10.82654 -10.73783 -10.38651 -10.26670 -9.88480 -9.68325 -9.55708 -9.21859 -9.14704 -8.50687 -6.01511 -3.99283 1.56465 3.02696 3.33792 3.38875 3.40975 3.46161 3.75675 4.27774 4.39147 4.48635 4.51848 4.60792 4.67112 5.08262 5.12358 5.20962 5.26388 5.32426 5.33283 5.42046 5.46625 5.64505 5.92885 6.00623 6.33673 6.52431 6.63584 6.72343 6.86351 7.01384 7.22193 7.34077 7.47403 7.82871 8.57103 9.03333 9.61334 11.12055 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.055183 B = 0.003610 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.277768 B = 7753.856686 C = 7877.350457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.118 4.118 12 C 0.061 3.939 13 O -0.363 6.363 14 C 0.009 3.991 15 H 0.102 0.898 16 C 0.072 3.928 17 O -0.370 6.370 18 C 0.064 3.936 19 C -0.205 4.205 20 C 0.328 3.672 21 O -0.426 6.426 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.208 -14.962 0.326 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.155 4.155 12 C -0.014 4.014 13 O -0.281 6.281 14 C -0.050 4.050 15 H 0.120 0.880 16 C -0.005 4.005 17 O -0.289 6.289 18 C -0.013 4.013 19 C -0.243 4.243 20 C 0.200 3.800 21 O -0.296 6.296 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.929 -14.462 -0.035 26.269 hybrid contribution 0.007 0.735 -0.263 0.781 sum 21.937 -13.727 -0.299 25.879 Atomic orbital electron populations 1.69924 1.06318 1.26855 1.51362 1.25046 0.94750 0.99238 0.94585 0.86755 0.80409 0.83516 0.78498 1.20293 1.18943 1.21409 1.21171 0.89585 0.94452 1.50635 0.91087 1.19567 0.97022 0.92153 0.96359 1.21400 0.90877 1.00265 1.01196 1.21658 0.97596 0.93448 1.02812 1.22846 0.78525 0.99947 1.00128 1.87945 1.21710 1.23868 1.94622 1.23418 0.98232 0.88436 0.94959 0.88003 1.22614 0.89646 0.86096 1.02133 1.87971 1.77042 1.37540 1.26310 1.22684 0.94419 1.02403 0.81797 1.23112 0.98471 0.99027 1.03713 1.25654 0.78047 0.84716 0.91540 1.90458 1.40647 1.53109 1.45426 0.92779 0.96533 0.96967 0.92688 0.92662 0.91503 0.91584 0.93083 0.93016 0.91363 0.86644 0.87264 0.92164 0.87283 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.12 -2.03 5.58 -26.74 -0.15 -2.18 16 12 C 0.06 0.91 5.65 37.15 0.21 1.12 16 13 O -0.36 -5.15 9.68 -53.88 -0.52 -5.67 16 14 C 0.01 0.10 3.09 -27.30 -0.08 0.02 16 15 H 0.10 0.92 7.80 -51.93 -0.41 0.52 16 16 C 0.07 0.61 6.52 37.34 0.24 0.85 16 17 O -0.37 -2.96 10.68 -35.23 -0.38 -3.34 16 18 C 0.06 0.38 6.85 37.35 0.26 0.63 16 19 C -0.21 -1.42 6.40 -27.30 -0.17 -1.60 16 20 C 0.33 3.68 6.73 -28.24 -0.19 3.49 16 21 O -0.43 -6.61 17.07 -12.66 -0.22 -6.83 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 300.99 15.07 4.54 4.54 Total: -1.00 -34.08 300.99 -6.86 -40.93 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.81 Total: -5.47 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.57 Total: -14.05 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.11 Total: -15.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.08 -6.86 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686522489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.378 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds