Wall clock time and date at job start Mon Mar 30 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47604 * 179.97438 * 12 11 10 14 14 C 1.42903 * 114.00537 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.72497 * 330.00516 * 14 13 12 16 16 C 1.53353 * 109.73774 * 209.34746 * 14 13 12 17 17 O 1.42911 * 109.26738 * 188.14228 * 16 14 13 18 18 C 1.42896 * 114.54191 * 64.86117 * 17 16 14 19 19 C 1.53362 * 109.27411 * 295.08659 * 18 17 16 20 20 C 1.51510 * 108.09527 * 52.26042 * 19 18 17 21 21 O 1.20766 * 121.21562 * 131.60252 * 20 19 18 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 26 26 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 27 27 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 28 28 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 29 29 H 1.09004 * 109.46998 * 300.00439 * 12 11 10 30 30 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 31 31 H 1.09000 * 109.50585 * 308.03469 * 16 14 13 32 32 H 1.09003 * 109.50845 * 68.15625 * 16 14 13 33 33 H 1.08994 * 109.50529 * 175.14642 * 18 17 16 34 34 H 1.08994 * 109.50350 * 55.02586 * 18 17 16 35 35 H 1.08993 * 109.74033 * 292.60564 * 19 18 17 36 36 H 1.08998 * 109.73775 * 171.90311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 6 6.0613 -4.0793 -0.0022 13 8 7.4903 -4.0794 -0.0028 14 6 8.0715 -5.3849 -0.0042 15 1 7.4096 -6.0828 0.5085 16 6 9.4319 -5.3469 0.7027 17 8 10.0877 -6.6050 0.5313 18 6 10.4319 -6.9157 -0.8204 19 6 9.1490 -7.0767 -1.6452 20 6 8.2939 -5.8445 -1.4307 21 8 7.8069 -5.2506 -2.3627 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 3.6577 -3.1515 0.8880 26 1 3.6583 -3.1496 -0.8920 27 1 5.9147 -2.1222 -0.8909 28 1 5.9148 -2.1238 0.8891 29 1 5.6979 -4.5936 0.8875 30 1 5.6979 -4.5926 -0.8925 31 1 10.0447 -4.5559 0.2703 32 1 9.2847 -5.1542 1.7654 33 1 11.0004 -7.8452 -0.8467 34 1 11.0337 -6.1083 -1.2374 35 1 8.6074 -7.9628 -1.3144 36 1 9.4000 -7.1710 -2.7017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686522489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:37 Heat of formation + Delta-G solvation = -168.185592 kcal Electronic energy + Delta-G solvation = -17119.739907 eV Core-core repulsion = 14181.788251 eV Total energy + Delta-G solvation = -2937.951657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47288 -38.94461 -38.73245 -36.47201 -34.44304 -32.65918 -31.95569 -30.37527 -26.65325 -25.00037 -24.71915 -23.18111 -21.86662 -20.67961 -18.89070 -18.20062 -17.76350 -17.59181 -16.88484 -16.49609 -16.36829 -16.21656 -15.32261 -15.25565 -14.89657 -14.75913 -14.55565 -13.83690 -13.49664 -13.37633 -13.29138 -13.03560 -12.58748 -12.55010 -12.16646 -11.90692 -11.78390 -11.59191 -11.49343 -11.32161 -11.31000 -10.87981 -10.77850 -10.13017 -8.31324 -6.35642 0.71947 1.34775 1.37151 1.49696 2.22266 2.35377 2.68616 3.02054 3.03946 3.59590 3.71705 3.89358 3.93122 4.00337 4.12881 4.18869 4.35422 4.42962 4.50619 4.52696 4.61728 4.75501 4.79779 4.83893 4.90479 5.06762 5.07443 5.13061 5.49036 5.58517 5.65082 5.83350 6.08494 6.26475 6.35776 6.72145 7.29199 8.85606 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.055183 B = 0.003610 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.277768 B = 7753.856686 C = 7877.350457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.250 1.250 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.109 4.109 12 C 0.069 3.931 13 O -0.380 6.380 14 C -0.001 4.001 15 H 0.120 0.880 16 C 0.079 3.921 17 O -0.375 6.375 18 C 0.061 3.939 19 C -0.197 4.197 20 C 0.325 3.675 21 O -0.480 6.480 22 H 0.267 0.733 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.824 -15.346 1.069 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.173 1.173 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.050 4.050 10 C -0.130 4.130 11 C -0.147 4.147 12 C -0.007 4.007 13 O -0.299 6.299 14 C -0.060 4.060 15 H 0.138 0.862 16 C 0.002 3.998 17 O -0.293 6.293 18 C -0.015 4.015 19 C -0.235 4.235 20 C 0.201 3.799 21 O -0.355 6.355 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 24.576 -14.880 0.724 28.739 hybrid contribution -0.832 0.730 -0.496 1.213 sum 23.744 -14.149 0.228 27.641 Atomic orbital electron populations 1.70074 1.08307 1.28228 1.52679 1.26062 0.95680 1.03680 0.94048 0.85611 0.79345 0.78032 0.79393 1.18749 1.17330 1.20842 1.21535 0.92199 0.93184 1.50457 0.94978 1.19536 0.93831 0.95060 0.96584 1.21243 0.93295 0.97495 1.01001 1.21465 0.95008 0.95376 1.02808 1.22627 0.79374 0.98150 1.00577 1.87884 1.20942 1.26261 1.94795 1.23791 0.99629 0.87255 0.95340 0.86220 1.22603 0.88202 0.86426 1.02617 1.87979 1.76711 1.37110 1.27484 1.22917 0.93913 1.04032 0.80632 1.23141 0.98317 0.97311 1.04682 1.26320 0.77142 0.85298 0.91146 1.90445 1.43102 1.55125 1.46788 0.92435 0.96581 0.95897 0.92284 0.93586 0.92475 0.90572 0.91025 0.94171 0.91604 0.85242 0.84252 0.91883 0.85276 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 2 C 0.00 0.11 5.47 84.66 0.46 0.57 16 3 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.54 -32.07 9.66 25.60 0.25 -31.82 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 11 C -0.11 -3.64 5.58 30.59 0.17 -3.47 16 12 C 0.07 1.96 5.65 71.98 0.41 2.37 16 13 O -0.38 -10.31 9.68 -131.15 -1.27 -11.58 16 14 C 0.00 -0.02 3.09 30.22 0.09 0.08 16 15 H 0.12 1.89 7.80 -2.39 -0.02 1.87 16 16 C 0.08 1.14 6.52 72.10 0.47 1.61 16 17 O -0.37 -4.88 10.68 -148.98 -1.59 -6.47 16 18 C 0.06 0.54 6.85 72.10 0.49 1.03 16 19 C -0.20 -2.26 6.40 30.23 0.19 -2.07 16 20 C 0.32 6.96 6.73 29.62 0.20 7.16 16 21 O -0.48 -15.04 17.07 16.36 0.28 -14.76 16 22 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 23 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 24 H 0.02 1.06 7.57 -2.39 -0.02 1.05 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 30 H 0.04 1.23 7.87 -2.38 -0.02 1.21 16 31 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.95 300.99 3.60 -71.35 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.98 Total: 3.53 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.02 Total: -28.63 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.30 Total: -60.92 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -2.58 Total: -32.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -74.95 3.60 -71.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686522489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.839 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds